| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3310 |
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| Symbol | |
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| ID | 5613569 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4025750 |
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| End bp | 4027102 |
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| Gene Length | 1353 bp |
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| Protein Length | 450 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934248 |
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| Product | hypothetical protein |
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| Protein accession | YP_001475042 |
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| Protein GI | 157376442 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1611] Predicted Rossmann fold nucleotide-binding protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0029835 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATAGTAA AAGTAAGCCC AAGGGGAAGC ATGGATCAGC TTTCTCAACT CGAAGTCGAT
CGTGTCAAAC AGAGTGCCAA AAGCGAGCTC TACCAACTTT TTCGCAACTG CTCCCTCGCA
GTGCTCGCCT CGGGTATCCA GGGCGATAAT GCCGAAGGTC TCTTCAAACA GTTCAGTAAC
TTTAATATTA ATGTCCTGCG CCGTGAACGC GGCATTAAAA TCGAACTGGT AAACCCACCG
GAAGAAGCCT TCGTCGATGG CAAGATTATC GCAGGTATTC AAGAGCACCT TTTTGCCGTA
CTGAGAGACA TTGTCTATCT CAGTGATAAG TATGAAAACC TCAGGCACAT CAATTTAACT
AACTCCAGCC ATGTCACTAA TGTTGTCTTC GACATATTGC GCAATGGACA GGTTATCCCC
TTCGAAGATC CAAACGTTGT GGTCTGCTGG GGTGGACACA GCATCAATGC CAACGAATTT
CAATACACCC GAGAGGTGGG GTATGAGCTT GGTCTGAGAG AGATGAATAT CTGTACGGGT
TGTGGACCCG GAGCCATGGA AGGGCCGATG AAAGGCGCCA CCATTGGTCA TGCGAAGCAA
CGTATCGGTC AGGCACGCTA TATCGGACTC ACGGAGCCAA GCATTATTGC GGCTGAGCCG
CCAAATCAGA TCGTCAATGA GCTTGTCATA CTGCCCGATA TCGAAAAACG ACTAGAAGCC
TTCGTCCGAC TCGGACATGG CATAGTGATC TTTCCCGGTG GCGCCGGGAC GGCCGAAGAG
CTGTTGTACC TGTTAGGCAT ACTGCTTAAC AAAGAAAATG AAGAGATGCC TTTCCCGTTA
GTATTAACCG GCCCTAAAGA GAGTGCCGAA TACTTCATGA GAATCGATGA GTTTATTGCC
GCAACTTTAG GTGATGAGGC CCAGAGCAAA TATGAGATTG TCATCGATGA TCCGGTCCGG
GTAGCAAGGA TCATGAGCCA TGGTATGGAT GTGATAAAAG ATCATCGTAA AATCTCCGGA
GACTCCTATC AATACAATTG GTCACTCAAG ATTGAACCGG AATTTCAACT CCCCTTTATC
CCGACTCATG AGATGATGGG GAATCTGAAC TTACACTATC AATCCAATAA GGCCGAACTG
GCGGCGAATC TCCGCAGAGC CTTCTCCGGC ATTGTCGCCG GTAATGTTAA AATGGAAACC
ATCAGGAGTG TGGTGAAAGA GGGTCCCTTT GAAATAAAAG GCGATCCCAA TCTGATGGCA
TTATTGGATA AGTTATTGAG TGAATTCGTT AAACAGCAAA GAATGAAGTT ACCGGGAACC
GAATACGTCC CCTGTTACAA AATCAATACT TAG
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| Protein sequence | MIVKVSPRGS MDQLSQLEVD RVKQSAKSEL YQLFRNCSLA VLASGIQGDN AEGLFKQFSN
FNINVLRRER GIKIELVNPP EEAFVDGKII AGIQEHLFAV LRDIVYLSDK YENLRHINLT
NSSHVTNVVF DILRNGQVIP FEDPNVVVCW GGHSINANEF QYTREVGYEL GLREMNICTG
CGPGAMEGPM KGATIGHAKQ RIGQARYIGL TEPSIIAAEP PNQIVNELVI LPDIEKRLEA
FVRLGHGIVI FPGGAGTAEE LLYLLGILLN KENEEMPFPL VLTGPKESAE YFMRIDEFIA
ATLGDEAQSK YEIVIDDPVR VARIMSHGMD VIKDHRKISG DSYQYNWSLK IEPEFQLPFI
PTHEMMGNLN LHYQSNKAEL AANLRRAFSG IVAGNVKMET IRSVVKEGPF EIKGDPNLMA
LLDKLLSEFV KQQRMKLPGT EYVPCYKINT
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