Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3309 |
Symbol | |
ID | 5610840 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4024096 |
End bp | 4025640 |
Gene Length | 1545 bp |
Protein Length | 514 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640934247 |
Product | diguanylate cyclase |
Protein accession | YP_001475041 |
Protein GI | 157376441 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.430472 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.00145526 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCGAGCA CATCTCAACT CAGCTTATTA AAGCAAAAGC TCCATTCTGC AAAAGTTGCT CTCGATGAAA TGACAGAAGG GAACAATGAA AAGTTGCACA CACTGCTGCA ATTCATCGGT CACTTGAGCC TTGCTTGCAA AGGACAAAAC CTCGAGTTAG ATAATAAACT GGCCAAGTTG AGACACCAGC TCAGCAATGC TGACAACGTC GAAGAATCCC TCCCAGAGCT TGTTGAAGTA GAGCAACTGC TTAAGCAACA GTACAACCAT GTCATGGTGC AACTCGAAGA TAGCCGTGCA AGCCTGTCTC GCGTCATCAG ACAGATCCAA AGGGTTGAGT CGGTACCGGA TAAAGTAAAG AAAGAGATCA ACTACTATAA GAAAGATCTC GCCAAGCCTT TTCATACATT TTGGGACTAC ATCCCGAAAG TCGAACAACT GGTTGGCTTT TATGAAAGCA TATTACAAGA GCAGCTAGCT CAAGGTGATA AGCTCGTTGT TCTACCTAAG CATAGACAGC TGGCCCATGA GCTGGCACAT ATGATTTCCG AGGTAGAGTT TAGAAAAGAT CAGCGTGATC AAGTACTCGT TATCAAAGAA ACCCTCTCTA ATGAGATCGA AGTCGATAGC TTAATCGACT CTTATCAAGT CATCCTGTCT CTACTTCTTG ATAATATTGC ACGTGAAAAA TCGGCTTCTC AAGAGTTTTT ATTCGCCCTC AATGATGCCT TGTCTGCGGT CAGGGAAGTC GTCACCGACT CATACAACAA TACCCAACGC AGTTTTCAGT TAAAGAAACA GCTAAACCGT GAGATAAACT CAAGAGTTGA TGATGTCGGT GAAGCCATTA TTGATATCGA TGACATTCAT AGCCTTAAAT CTCAGGTCAC AGAACATCTA GCCTCTATTC GCACCGCCTT GGGCCGCAAG GAAGCATTGG AAGAACGCGA ACAGACATTG CTTCGAAAGT CGATGGAGAC GATGCGTAAA GAGCTTAATG ACCTCAGTAA AGAAGCCAAT ACCTACAAGG AGCGTCTGTT CGAGCAACAG AAGCTCAACC TGCTCGATTC ATTAACTCAG CTACCTAACC GTGCGGCACT CGAAGAGAGA ATGGATCAAG AGTTTCGTAA TTTTCAGCGC CAAAAACTCC CCCTGTGGGT TGCTGTCGCC GACATAGATC ACTTCAAAAC CATCAATGAC AGTTTCGGTC ACAGTACCGG TGATAAAACC TTGCAAGTCA TTGCTATGGC ACTAAAAAAT TCTCTCAGAG ATACTGAGTT TGTTGCACGA TACGGTGGTG AAGAGTTCGT ACTTATCATC CCGGATGTCA ATGCCGAAGA TATTGATCAT CTTTTAAACC GAGTAAGGGA AAAAGTAAAA AGTATTCCTT TTAAGTTTAA AAATCAGAGA ATTACAGTTA CAGTATCTAT AGGTGCTGCA CAAATTTTAG AAAATGAGCT TATCAATGAA ACGTTTGAAA GAGCCGATGC AGCACTCTAC CGAGCTAAAC ATGAAAGCAG AGACAGAGTT ATCATCGACG TGTAA
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Protein sequence | MASTSQLSLL KQKLHSAKVA LDEMTEGNNE KLHTLLQFIG HLSLACKGQN LELDNKLAKL RHQLSNADNV EESLPELVEV EQLLKQQYNH VMVQLEDSRA SLSRVIRQIQ RVESVPDKVK KEINYYKKDL AKPFHTFWDY IPKVEQLVGF YESILQEQLA QGDKLVVLPK HRQLAHELAH MISEVEFRKD QRDQVLVIKE TLSNEIEVDS LIDSYQVILS LLLDNIAREK SASQEFLFAL NDALSAVREV VTDSYNNTQR SFQLKKQLNR EINSRVDDVG EAIIDIDDIH SLKSQVTEHL ASIRTALGRK EALEEREQTL LRKSMETMRK ELNDLSKEAN TYKERLFEQQ KLNLLDSLTQ LPNRAALEER MDQEFRNFQR QKLPLWVAVA DIDHFKTIND SFGHSTGDKT LQVIAMALKN SLRDTEFVAR YGGEEFVLII PDVNAEDIDH LLNRVREKVK SIPFKFKNQR ITVTVSIGAA QILENELINE TFERADAALY RAKHESRDRV IIDV
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