Gene Ssed_3309 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3309 
Symbol 
ID5610840 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4024096 
End bp4025640 
Gene Length1545 bp 
Protein Length514 aa 
Translation table11 
GC content43% 
IMG OID640934247 
Productdiguanylate cyclase 
Protein accessionYP_001475041 
Protein GI157376441 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.430472 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00145526 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCGAGCA CATCTCAACT CAGCTTATTA AAGCAAAAGC TCCATTCTGC AAAAGTTGCT 
CTCGATGAAA TGACAGAAGG GAACAATGAA AAGTTGCACA CACTGCTGCA ATTCATCGGT
CACTTGAGCC TTGCTTGCAA AGGACAAAAC CTCGAGTTAG ATAATAAACT GGCCAAGTTG
AGACACCAGC TCAGCAATGC TGACAACGTC GAAGAATCCC TCCCAGAGCT TGTTGAAGTA
GAGCAACTGC TTAAGCAACA GTACAACCAT GTCATGGTGC AACTCGAAGA TAGCCGTGCA
AGCCTGTCTC GCGTCATCAG ACAGATCCAA AGGGTTGAGT CGGTACCGGA TAAAGTAAAG
AAAGAGATCA ACTACTATAA GAAAGATCTC GCCAAGCCTT TTCATACATT TTGGGACTAC
ATCCCGAAAG TCGAACAACT GGTTGGCTTT TATGAAAGCA TATTACAAGA GCAGCTAGCT
CAAGGTGATA AGCTCGTTGT TCTACCTAAG CATAGACAGC TGGCCCATGA GCTGGCACAT
ATGATTTCCG AGGTAGAGTT TAGAAAAGAT CAGCGTGATC AAGTACTCGT TATCAAAGAA
ACCCTCTCTA ATGAGATCGA AGTCGATAGC TTAATCGACT CTTATCAAGT CATCCTGTCT
CTACTTCTTG ATAATATTGC ACGTGAAAAA TCGGCTTCTC AAGAGTTTTT ATTCGCCCTC
AATGATGCCT TGTCTGCGGT CAGGGAAGTC GTCACCGACT CATACAACAA TACCCAACGC
AGTTTTCAGT TAAAGAAACA GCTAAACCGT GAGATAAACT CAAGAGTTGA TGATGTCGGT
GAAGCCATTA TTGATATCGA TGACATTCAT AGCCTTAAAT CTCAGGTCAC AGAACATCTA
GCCTCTATTC GCACCGCCTT GGGCCGCAAG GAAGCATTGG AAGAACGCGA ACAGACATTG
CTTCGAAAGT CGATGGAGAC GATGCGTAAA GAGCTTAATG ACCTCAGTAA AGAAGCCAAT
ACCTACAAGG AGCGTCTGTT CGAGCAACAG AAGCTCAACC TGCTCGATTC ATTAACTCAG
CTACCTAACC GTGCGGCACT CGAAGAGAGA ATGGATCAAG AGTTTCGTAA TTTTCAGCGC
CAAAAACTCC CCCTGTGGGT TGCTGTCGCC GACATAGATC ACTTCAAAAC CATCAATGAC
AGTTTCGGTC ACAGTACCGG TGATAAAACC TTGCAAGTCA TTGCTATGGC ACTAAAAAAT
TCTCTCAGAG ATACTGAGTT TGTTGCACGA TACGGTGGTG AAGAGTTCGT ACTTATCATC
CCGGATGTCA ATGCCGAAGA TATTGATCAT CTTTTAAACC GAGTAAGGGA AAAAGTAAAA
AGTATTCCTT TTAAGTTTAA AAATCAGAGA ATTACAGTTA CAGTATCTAT AGGTGCTGCA
CAAATTTTAG AAAATGAGCT TATCAATGAA ACGTTTGAAA GAGCCGATGC AGCACTCTAC
CGAGCTAAAC ATGAAAGCAG AGACAGAGTT ATCATCGACG TGTAA
 
Protein sequence
MASTSQLSLL KQKLHSAKVA LDEMTEGNNE KLHTLLQFIG HLSLACKGQN LELDNKLAKL 
RHQLSNADNV EESLPELVEV EQLLKQQYNH VMVQLEDSRA SLSRVIRQIQ RVESVPDKVK
KEINYYKKDL AKPFHTFWDY IPKVEQLVGF YESILQEQLA QGDKLVVLPK HRQLAHELAH
MISEVEFRKD QRDQVLVIKE TLSNEIEVDS LIDSYQVILS LLLDNIAREK SASQEFLFAL
NDALSAVREV VTDSYNNTQR SFQLKKQLNR EINSRVDDVG EAIIDIDDIH SLKSQVTEHL
ASIRTALGRK EALEEREQTL LRKSMETMRK ELNDLSKEAN TYKERLFEQQ KLNLLDSLTQ
LPNRAALEER MDQEFRNFQR QKLPLWVAVA DIDHFKTIND SFGHSTGDKT LQVIAMALKN
SLRDTEFVAR YGGEEFVLII PDVNAEDIDH LLNRVREKVK SIPFKFKNQR ITVTVSIGAA
QILENELINE TFERADAALY RAKHESRDRV IIDV