| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3307 |
|---|
| Symbol | |
|---|
| ID | 5610838 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 4019643 |
|---|
| End bp | 4021439 |
|---|
| Gene Length | 1797 bp |
|---|
| Protein Length | 598 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640934245 |
|---|
| Product | peptidase M61 domain-containing protein |
|---|
| Protein accession | YP_001475039 |
|---|
| Protein GI | 157376439 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3975] Predicted protease with the C-terminal PDZ domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0838775 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0000441235 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGAAACCTG TTGTCCCATT GATTTTAACT TTTAGCGGAC TATTCTCTGC GACCATTCAA
GCCGAAGTGA GTTACCGAAT CGATCTGACC CAGCCACTGC ACCACAGTGC AAGCGTGGAG
GTTAATTTCC CTAAAACGAG TTCGAGTCAC TTTACCGTCA ACTTACCGGT TTGGCGTACA
GGCAAGTATC AAGTATTGCC TCTGGCCGAT AGCATCCGAT CCTTTTCTGC CAAGGATGAA
GCGGGTCAGC CACTGCCCGT TGTTCGTATG GCGAGTGGAG AGTGGCAAGT CGGGTTAACT
CAGCCGACTG CGGTTTCAGT GTCATATCAG CTACATGCTA ATCAGCTGGG AGAAAGAGTT
GCACATATCG ATGGGACTCA CGCATTTTTG GATGCCAGTG GCGTGTTTGT CTACAGTCCC
GAGTTCAGAG ATGAAGCGAT AACTGTGTCG ATGCAGGTGC CTGACAGTTG GCGAAGTTAT
TCGGGGATGG CAAAAGGCGA ACAAGCACAT TCGTTTGTTG GCACCAGCTA CGATGTGTTA
GTCGACTCAC CGATAGAGAC AGGGATAAAC CATCATAGAC AGTTTAGCGC CGATGGGCGT
GATTATGAAC TCGTTGTCTG GGGAGAGGGG AACTACGATC TTGATAAGAT GGTGGCTGAT
CTGACCAAGC TTAGTGGTCA AGCTAATGCG ATTTGGGAGG GATATCCTTT CGAGCGTTAT
GTCTATATGG TCCACGCGAC CAGCGGTGTC AGTGGGGCTA CGGAACACCT GAACTCGACG
ATTATTCAAC GTCCCAGGTT CAGCTTCCGT GAACGAAAAG ATTATTTAGG TTTTATTAAA
ACGGCTTCCC ATGAATTTGT TCATACCTGG AACGTAAAGG CATATCGCCC TGTGGGGTTG
GTGCCTTACG ATTACCAAAA AGAGAATATG TCTGAACTCT TATGGTTATC GGAAGGCTCT
ACCAGCTATT TTCAGAGTCA GTTACTCCTT CGCGCCGGGG TGATCACTGT GAAGGAGTTT
TTTGACGATC TGGCCAAACG TATTGCCAAA AATGAGTTAA CGCCGGGTCG GGAGGTCCAG
TCTGTTGCCG AGGCGAGTGT CAATCAGTGG TCCAGCGGCG ATGGTGATTA TGCCATTAAT
CACAGTGCTA ATATCTACTC AGAGGGGGTT CTCGCCTCAC TGGCCCTCGA TTTTTCTCTC
TTAGATGAGT CAGGTTTGAA GCACTCCTAC AGAGATCTGC ATAAAGCACT CTATCGTGAC
CACAGGGTAC CGGCAGGCTT CGATGTATCG GATGTGCAGC AGATACTAAT GAAGTTGACC
GGCGAAGATT ATAACGCCTG GTGGCAAACA CATATTAATT CGCCATTGAG TCTGGACTTT
CCAGCTTTGC TGAAAAAAGC CGGGTTAAAG ATGGATTACT CAAAAGATTC GAAAAGCATC
CCATATACAG GGATGAAACC CGACTCTTCG CTTATTTTGA CTCAAGTGTT GAGGGATAGC
CCTGCATGGA ATGCCGGGAT TGTCGCCGGC GATGAGATTG TTGCCATCAA CGGTCTTAAG
GTCACTGCGA AAGGCTTCGA TGCACGCATT AAAGACTTTA AAGCCGGCGG CCAGATTGAG
ATCACTCTGT TTAGTGATGA CAGGCTTAAA TCTGTGCTCT TAACCTTAGG CGAGCAGCAA
AGTGGGCAGT TAATGCTTAA GAGTGTGAAA AAGCCAAGCC GTAGTCAGAA GGCCTTCTTT
GAGGCTTGGT CAGGCATAGA TTGGCCTTTC GATAGGAAAG GGCTGCTAAA ATCTTGA
|
|---|
| Protein sequence | MKPVVPLILT FSGLFSATIQ AEVSYRIDLT QPLHHSASVE VNFPKTSSSH FTVNLPVWRT
GKYQVLPLAD SIRSFSAKDE AGQPLPVVRM ASGEWQVGLT QPTAVSVSYQ LHANQLGERV
AHIDGTHAFL DASGVFVYSP EFRDEAITVS MQVPDSWRSY SGMAKGEQAH SFVGTSYDVL
VDSPIETGIN HHRQFSADGR DYELVVWGEG NYDLDKMVAD LTKLSGQANA IWEGYPFERY
VYMVHATSGV SGATEHLNST IIQRPRFSFR ERKDYLGFIK TASHEFVHTW NVKAYRPVGL
VPYDYQKENM SELLWLSEGS TSYFQSQLLL RAGVITVKEF FDDLAKRIAK NELTPGREVQ
SVAEASVNQW SSGDGDYAIN HSANIYSEGV LASLALDFSL LDESGLKHSY RDLHKALYRD
HRVPAGFDVS DVQQILMKLT GEDYNAWWQT HINSPLSLDF PALLKKAGLK MDYSKDSKSI
PYTGMKPDSS LILTQVLRDS PAWNAGIVAG DEIVAINGLK VTAKGFDARI KDFKAGGQIE
ITLFSDDRLK SVLLTLGEQQ SGQLMLKSVK KPSRSQKAFF EAWSGIDWPF DRKGLLKS
|
|---|
| |