| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3300 |
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| Symbol | |
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| ID | 5610412 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4011249 |
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| End bp | 4012133 |
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| Gene Length | 885 bp |
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| Protein Length | 294 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934238 |
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| Product | collagenase |
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| Protein accession | YP_001475032 |
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| Protein GI | 157376432 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000170282 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000000275437 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | GTGAACAGAA CTCATTTACT CCCTATCACC GGCATCTTAT GTTTGTGCTC ATCTATGGTA
CAAGGCCAGG AAATTGCGCC ATTACCTGAA GTGTTGATAC AGAACCATGC ATGCAGCGAC
ACCATAGTGA TCCGCTCTCA AGCATTGACG AAAACTCAGA TAGAGCAAGC CTGTGAACTA
ATGAGTAAGC AGGAGGTTAA GTTTCATCAG CTTTTTGGTA CTCAAGGTAA ACCGGTAACG
AATGATAATA ATGTGAGCAT GCGAGCGAAT GTCTACCACT CCAGTGACGA TTACAAGCGC
TATGTGACGG CTCATTTCGA TGTGCCCAGT GACAATGGCG GCATGTTCTT AGAGGGGTTA
CCACACAAGG CTGACAATCA GGCAGAATTT GTTGCCTATG AAAAAAAGGG GCAGATCTGG
AACCTGGCAC ATGAATATGT GCACTATTTA GATGGGCACT TCAACTTGTA TGGTGATTTT
TGTGCATCAC TGCATGACTC CCACAGCGCC CCCGAATACT GCCCCAAACC AGCACCTCTG
CTCCCCCACT TAGTGTGGTG GAGTGAAGGG TTAGGCGAGT ACATCTCTCA TGGCGATGAT
AATGCACCAG CCATTGCCAT AGCGAAGAGA CCCACCAGCG AAGGGAAAAA CTATCAACTG
AGTGAGCTGT TTAACACCAG CTATGAGAAA AATGGCGGCG GTGAGCGTGT CTATCGGTGG
GGCTATCTCG CTGTGCGCTT TATGATGGAG CAACATAAAG ATAAGGTCGA TACCATGCTT
TCTTTTACCC GTAAGGGCGA CTATCCAAGA TATCAAGCCC TGGTTAATGA GTGGGGAACC
AGCATGGATG AGGAGTTCCA GAGCTGGTTA AAGAGATTAA GTTAA
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| Protein sequence | MNRTHLLPIT GILCLCSSMV QGQEIAPLPE VLIQNHACSD TIVIRSQALT KTQIEQACEL
MSKQEVKFHQ LFGTQGKPVT NDNNVSMRAN VYHSSDDYKR YVTAHFDVPS DNGGMFLEGL
PHKADNQAEF VAYEKKGQIW NLAHEYVHYL DGHFNLYGDF CASLHDSHSA PEYCPKPAPL
LPHLVWWSEG LGEYISHGDD NAPAIAIAKR PTSEGKNYQL SELFNTSYEK NGGGERVYRW
GYLAVRFMME QHKDKVDTML SFTRKGDYPR YQALVNEWGT SMDEEFQSWL KRLS
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