| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3292 |
|---|
| Symbol | |
|---|
| ID | 5611583 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 4000612 |
|---|
| End bp | 4001280 |
|---|
| Gene Length | 669 bp |
|---|
| Protein Length | 222 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640934230 |
|---|
| Product | putative glutathione S-transferase |
|---|
| Protein accession | YP_001475024 |
|---|
| Protein GI | 157376424 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0625] Glutathione S-transferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.000000024408 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGATAGAAC TCTACACTGC AGCAACACCC AACGGACATA AGATCTCTAT CGCCTTAGAG
GAGATGGGAC TGGATTATCA GGTTATCCAT ATCGATCTGA TGGCTGGGGA GCAGAAAAGG
CCCGAGTTTA TAGCCATCAA CCCTAATGGC CGTATTCCTG CCATCATAGA CAGGGGTAAC
GATGATTTTA CCGTCTTCGA ATCCGGTGCA ATCTTGCTTT ATCTCGCCGA AAAGACGGGG
AAATTCCTGC CTGCTAACCC TAAGGAACGT TCGCAAGCGA CTCAATGGCT GATGTTCCAG
ATGGGCGGCG TCGGCCCCAT GATGGGACAA GCCAATGTCT TTTATCGCTA CTTCCAGGAA
AAAATTCCCG CGGCTATCGT TCGCTACCAA CATGAGAGCC GTCGCCTGTT CGAGGTGATG
AATAACCAGC TTGCCGACAA CCGCTACATA GCGGGCGATC AATACACCAT CGCCGACATG
GCCACCTGGC CTTGGGTGAG AACCTATGAG TGGAGCGGTG TCGATATCAC AGGACTAACC
CACCTTCAGC GTTGGATTGA GGAGTTAGCA CTAAGGCCCG CTTCTCAGAA AGGAATCGTC
ACCCCACCTT CATCGGAACT GAGCGAGGAG GAGCTAGCCA AGGAGATTAG GAAGATGGTG
ACGGAGTAG
|
|---|
| Protein sequence | MIELYTAATP NGHKISIALE EMGLDYQVIH IDLMAGEQKR PEFIAINPNG RIPAIIDRGN
DDFTVFESGA ILLYLAEKTG KFLPANPKER SQATQWLMFQ MGGVGPMMGQ ANVFYRYFQE
KIPAAIVRYQ HESRRLFEVM NNQLADNRYI AGDQYTIADM ATWPWVRTYE WSGVDITGLT
HLQRWIEELA LRPASQKGIV TPPSSELSEE ELAKEIRKMV TE
|
|---|
| |