| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3284 |
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| Symbol | |
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| ID | 5610032 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3986440 |
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| End bp | 3988377 |
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| Gene Length | 1938 bp |
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| Protein Length | 645 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934222 |
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| Product | diguanylate cyclase/phosphodiesterase with GAF sensor |
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| Protein accession | YP_001475016 |
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| Protein GI | 157376416 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000411961 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATGATTA AGGCCGCGGA ACGGCATTTA CAAGACGAAC ACCTGCTTGA TGATATATCG
GTCAATACCA CCGAGATATG CGTACCCGAA GATATCTTCA ATAGCTGGCA ACAGACACTG
GATCTGATCT CTGAGATTGT AGACACCCCG GCCGTGCTCA TCATGCGAAT ACACAAAAAT
GACAATAAGA TGGAGGTGTT TGCATCAAGC AAGAGCACCG GAAACCCCTA CCGTCGCTAT
GACAACGATA ACTTAGGCAA GGGTCTCTAC TGCGAAACGG TTATCGCGCA AAATTGTGAG
TTGCATATTC CCAACGCCTT AAAAGACAGC GACTGGGATA ATAACCCGGA TCTAAAACTT
GGCATGATAG CCTACTGTGG CTTACCCCTA CTCTGGCCCG ATAACACTCC CTTCGGCACC
ATATGTATGC TCGACAATAA GGAGCACAGT TACAGCCAAA AATTCAGGCA CCTGTTAGCC
AGATTTCAAG AGGCGGTAGT CACCAACCTT GCCACCCTGT ACCAGCAAGA AAAGCTGCAA
CACCTGAATC AACTCCTGGA AACGAGGGTG CAACTCAGAA CCCATGAACT GGCCGAACTC
AGCACAAAAC TTATCCGGGA GATAGAGAAC AGAACCTCGG CAGAATTTAG CCTCGAATAC
TCAAAAAACT ATGATGAACT CACGGGACTA CCTATGCGTT CCGGCTTGAT CGACTCGCTC
ACTCAGATGC TTAAACAGAG CAAAGCGAGC GAAACTGTCA CGGTACTCTA TTTCGGTCTG
CGTAAATTCA AATCGATTAA CGACAGTTAT GGTTACCTCA TCGGCGATCA GGTTCTTTCT
CAATTCAGTC AAAGATTAAA ACAGTACTTA GATAAAGATA CCTTAATCGC CCGCATTGCC
GGTTCTGAAT TTGTCATCGC CCGCTCCCAT AAGAAAACCG CAAGCAATGA TCTGGAGCTG
ATAACAAAAA TATTAGACTG CTGTAACGCC CCTTTCTCTC TTGCTGGGTT CACCATTACC
ATTCCCTCCT GCATGGGGAT TGCCCAGTTC CCCACCGACG CAACAACGGC AGAGGAGTTG
CTACAAAAAT CCAGCGCTGC GATGAGCATA AGTAAAACCG AAGGAGTCCG TTATAGCTTT
TTCAATCAAG ATACTCAGTC CAGTATAGAA CAGCGCTATC AACTGGAGAG CCATCTGGTC
GATGCACTCA ATAATCAAGA GCTATACCTT AACTATCAAC CTTTAGTCTG CTTAAAGACC
CATAGAATAC TCGGCGCAGA GGCTCTGCTG AGATGGCATA ATCCGGTCTT GGGACAGGTG
CCACCCGACA AGTTTATTAA CTTAGCCGAG CATAATGGTC AGATCATCGA GATAGGTAAC
TTCGTACTCC ATAGTGCACT TGCACAGGCA GCTCACTGGC AGGCCTTACA GCAAAGTGAC
TTTAGAATTG CCATCAACAT ATCACCACTG CAGTTCAGAG CGCCCAACTT TGCCGAGCAT
ATCGCCGATC TGCTTACTCT GTACCAGCTA CCCACCACCT CATTAGAGCT CGAGATCACT
GAGGGTATCT TGTTACAGGA TGAACACTTA GCCCATGACT CGATCAAAAA GCTACAAGCA
CAGGGAATAC GTATCTCTCT CGATGATTTC GGTACCGGGT ACTCCTCATT AAGTTATCTG
CAGAAATACT CATTTAATAC CCTGAAGATT GACCGCTGCT TTATTACCAA CCTAGAGAAG
AATGAGCAGG ACAGAGAGCT CACCCGGGCC ATTATCGCCA TGGGTAAGAA GCTTAACCTA
CATGTGATCG CCGAAGGGGT TGAGACACAG GAGCAAGATC GGTTTATCCA GAGTGAAGAC
TGTGATTATG GTCAGGGCTA TCTCTACGGC AAACCGACCA GTGCCGATGA GTTTGAGTCA
AACTACCTGA CAGAGTAA
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| Protein sequence | MMIKAAERHL QDEHLLDDIS VNTTEICVPE DIFNSWQQTL DLISEIVDTP AVLIMRIHKN
DNKMEVFASS KSTGNPYRRY DNDNLGKGLY CETVIAQNCE LHIPNALKDS DWDNNPDLKL
GMIAYCGLPL LWPDNTPFGT ICMLDNKEHS YSQKFRHLLA RFQEAVVTNL ATLYQQEKLQ
HLNQLLETRV QLRTHELAEL STKLIREIEN RTSAEFSLEY SKNYDELTGL PMRSGLIDSL
TQMLKQSKAS ETVTVLYFGL RKFKSINDSY GYLIGDQVLS QFSQRLKQYL DKDTLIARIA
GSEFVIARSH KKTASNDLEL ITKILDCCNA PFSLAGFTIT IPSCMGIAQF PTDATTAEEL
LQKSSAAMSI SKTEGVRYSF FNQDTQSSIE QRYQLESHLV DALNNQELYL NYQPLVCLKT
HRILGAEALL RWHNPVLGQV PPDKFINLAE HNGQIIEIGN FVLHSALAQA AHWQALQQSD
FRIAINISPL QFRAPNFAEH IADLLTLYQL PTTSLELEIT EGILLQDEHL AHDSIKKLQA
QGIRISLDDF GTGYSSLSYL QKYSFNTLKI DRCFITNLEK NEQDRELTRA IIAMGKKLNL
HVIAEGVETQ EQDRFIQSED CDYGQGYLYG KPTSADEFES NYLTE
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