| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3275 |
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| Symbol | |
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| ID | 5613679 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3975777 |
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| End bp | 3976559 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640934213 |
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| Product | AraC/XylS family transcriptional regulator |
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| Protein accession | YP_001475007 |
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| Protein GI | 157376407 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0504601 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCGTTTA TCAAGCAAGA GAACCGTTTC GATGTCGATA CCTTGGATAC GCAGGTGGTT
GGTATTGCGG CCGATGTGGG CCGGCATGAC TCGGGGATGC ACAGGCATGG AAAGGCGCAG
CTTCTTTATG CATCGCTTGG CTGCATGAAC ATCACCTTAG ATAACACTCA GTGTATATTG
CCCCCGACCA AGGCGGCATG GATCCCTGCG GGCGTCGAGC ATTGTGTTCA AATGCGCAAT
GTCGTGGCCT ATCGCTCCGT CTATTTCGAT ATCCGTAAGT TCTCCGATCT ACCGCAAGAG
GTGAAGATCA TCTCGGTAAA TGCCTTGCTG CAGGCATTAA TCGAAAGGAT GGCGATGTGG
GAGTGGGATA AGCCGAACCG GGAGCAAGTC GCGGTCACTA CTCTGTTTAT CGAAGAGCTG
GAGTCTGCCC CCCAGGAGTC TCTGTTATTA CCTTTGCCAA GTGATCCGCG ATTGAAGCCT
TGGTTATCTG CACTGCAATC CGGGGATGAG CTACCTTTAG CCCTGAAAAC GATGGCGAAG
GGAATTGGCG CGAGTGAGAA GACCATATCC CGAATTTTCA GCAGGCAGAC CGGTATGCCC
TATCAGGCGT GGCGGCAGCA ATGGCGATTA CACGGTGCCA TCGAGCGTTT AGCATTGGGG
AGTTCGGTAT CTGAGGTCGC CTTCTCGTTA GGTTTCTCCA GCGATAGCGC CTTTATCAGC
TTCTTTAAAC AGCATCTGGG TAATACGCCT AGCCAGTATA TAAAAGCAAA AACAGCCGAT
TAG
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| Protein sequence | MAFIKQENRF DVDTLDTQVV GIAADVGRHD SGMHRHGKAQ LLYASLGCMN ITLDNTQCIL
PPTKAAWIPA GVEHCVQMRN VVAYRSVYFD IRKFSDLPQE VKIISVNALL QALIERMAMW
EWDKPNREQV AVTTLFIEEL ESAPQESLLL PLPSDPRLKP WLSALQSGDE LPLALKTMAK
GIGASEKTIS RIFSRQTGMP YQAWRQQWRL HGAIERLALG SSVSEVAFSL GFSSDSAFIS
FFKQHLGNTP SQYIKAKTAD
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