| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3272 |
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| Symbol | |
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| ID | 5613676 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3972230 |
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| End bp | 3973408 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934210 |
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| Product | hypothetical protein |
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| Protein accession | YP_001475004 |
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| Protein GI | 157376404 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0738] Fucose permease |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.388567 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.10012 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAACA AAATATCACT CACACTGTTG AGCTTTCTCG CCAACTTTAT CATGGCGGGT
TTTGCGACTC AGTTTGGAAT GTTAATCGAA CCTATCGCCG AGAAGTTTTC GGCTAACGTT
AATGAAGTCG CATCAATTTT CTCCCTTCTC AACGGCGGCT CCTTGGCGGG TACCGTTGCG
GCCTTCTTCC TGATCGAGAA GATAGGCGTC AAACGTATCA CCCTAATGAG TTACCTGACT
ATCGCCCTGA GCGCCGCGGC GCTTCACTTC GCCTCATCTT TGAGTATTGT CATGATGGCC
ATGACACTTA TCGGGCTGTG TGGCGGTGTG GGTCTGTGCA TCGCAGGCAC CATAGTGGTA
TCGGTATGGA AAGAGAAGAT CCAGAGCACC ATGTTAGTGG TACAGGATGC TACCTTTAAT
GTCGCCGGAG TGGTATTTCC GCTGATAACC ACGTACGCAC TGAGCAATGC ACTATCATGG
AGCTACAGCT ATCTGGCCGT AGGTTTAGTG GCTTTAGGTA CGGCAATCAT GGCCTTGATG
ACGAATTTCG ACCTGTGTGA TAGTCCGGTG GATAAGGATT CTGGTGAGAG TAACGATGAA
AAATCTGAAT GGAATTTCTC AATAATCAGT GCCGGTCTCG GCCTGTTCCT CGGCATGTTG
GCACTCTATA CCTTCCTGAC CTGGGCTCCT ATGTTCGTCA AAGAGAAGTT CGATATTCCA
TTTGAAGAAG CGGGCAACAT CATCACTCAG TATTGGTCGG CGGCCCTGGT TGGCGCCCTG
ATCTCCACTG CAATTGTATC TCGCGTGAAA ATTCAAAACT TCCTGATGGG GATGATGGCT
CTGGCCTTAA TCATCACCAG TGTGATCGTC ACCACAGATA AACTGGAGTG GATGTCATAT
CTCACTTACG GCTACGGCTT TGTCTGTGCG GCACTCTATA ACTCCTTTAT CGCCTACGGC
GTCTCATTTG TGAAACAGGC CAGCAGTAAA AATGTCTCCT TCATTTTAAT CAGCGGCAGT
GCAGGCGCCA TGTTCAGCCC GGCGATAAGC TCCATGTTTG AAACCATTAT TGGCCTACAG
ACCGTGATGT ATGCTATCCC GGTTATTTAC GCCATGATTT TAAGTATGCT GATCATCTCT
CGCCGTAAAA CAGCAGAAAA CAGATTAGCG ACTGCTTAA
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| Protein sequence | MKNKISLTLL SFLANFIMAG FATQFGMLIE PIAEKFSANV NEVASIFSLL NGGSLAGTVA
AFFLIEKIGV KRITLMSYLT IALSAAALHF ASSLSIVMMA MTLIGLCGGV GLCIAGTIVV
SVWKEKIQST MLVVQDATFN VAGVVFPLIT TYALSNALSW SYSYLAVGLV ALGTAIMALM
TNFDLCDSPV DKDSGESNDE KSEWNFSIIS AGLGLFLGML ALYTFLTWAP MFVKEKFDIP
FEEAGNIITQ YWSAALVGAL ISTAIVSRVK IQNFLMGMMA LALIITSVIV TTDKLEWMSY
LTYGYGFVCA ALYNSFIAYG VSFVKQASSK NVSFILISGS AGAMFSPAIS SMFETIIGLQ
TVMYAIPVIY AMILSMLIIS RRKTAENRLA TA
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