| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3271 |
|---|
| Symbol | |
|---|
| ID | 5614099 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 3971382 |
|---|
| End bp | 3972086 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640934209 |
|---|
| Product | purine nucleoside phosphorylase |
|---|
| Protein accession | YP_001475003 |
|---|
| Protein GI | 157376403 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0813] Purine-nucleoside phosphorylase |
|---|
| TIGRFAM ID | [TIGR00107] purine-nucleoside phosphorylase, family 1 (deoD) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.147124 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCAC ACATTAACGG CCAAAAGGGC GACTTTGCCG AAACCATCAT CATGCCAGGC
GACCCATTAA GGGCCAAGTA CATCGCCGAG ACGTTCCTCG ATGATGCCGT AGAGATCACC
AATATACGTA ACATGTTGGG TTATACCGGT TTCTACAAGG GCCAGCGTAT CTCCGTCATG
GGCCACGGTA TGGGCATCCC CTCTATGGTG CTTTACGCTC ACGAGCTGAT CAATGATTTC
GGTGTGAAGC GCATCATACG TGTCGGCAGT TTGGGGGCGA CCCAACAAGA TGTGAAGCTA
CACGATGTGA TCCTGGCACA AGCGGCAGGC ACAGACTCTC CCACCAATGC AAAGCGCAGC
AGCGGCTACC AGATGGCCAC CTCGGCCACC TTCGACCTAC TGCATAAAGC CTATAGCTCA
GCGGTTGAAA AACAGATCAG CGTCAAGGTG GGCAACATCT TCAGTGGCGA TATGTATTAC
GATCCCGATG AGGATATGAT CCCGGCACTG GAGCGTTTCG GGGTACTCGG CATCGATATG
GAAGTGGCGG GTCTCTATGG TTTGGCCCAC CAGCAGGGTA TCGAATCCTT AGCGATTCTA
ACCGTGTCGG ATCACTGTCT CACCGGGGAA GAGACGTCAG CCGAAGAGCG TCAGCTGTCA
TTCAATCAGA TGATCGAGCT GGCTTTAGAG ACAGCATGTA GCTAA
|
|---|
| Protein sequence | MTAHINGQKG DFAETIIMPG DPLRAKYIAE TFLDDAVEIT NIRNMLGYTG FYKGQRISVM
GHGMGIPSMV LYAHELINDF GVKRIIRVGS LGATQQDVKL HDVILAQAAG TDSPTNAKRS
SGYQMATSAT FDLLHKAYSS AVEKQISVKV GNIFSGDMYY DPDEDMIPAL ERFGVLGIDM
EVAGLYGLAH QQGIESLAIL TVSDHCLTGE ETSAEERQLS FNQMIELALE TACS
|
|---|
| |