| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3269 |
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| Symbol | |
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| ID | 5614097 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3968717 |
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| End bp | 3970519 |
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| Gene Length | 1803 bp |
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| Protein Length | 600 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934207 |
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| Product | response regulator |
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| Protein accession | YP_001475001 |
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| Protein GI | 157376401 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3437] Response regulator containing a CheY-like receiver domain and an HD-GYP domain |
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| TIGRFAM ID | [TIGR00277] uncharacterized domain HDIG |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.633194 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.184781 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAATACTA AAGTCACGTA TCTCAAATTC ATTGTAGTAA CGCTGTTTTT AATCTGGACA
ATCTTAATCG TTTCCATCCT GATAAATTGG TTTAGTCAGG AAAATCGTCA CGCCGAAAGG
CTGGCACTCA AAGAAGCCAC GGTAAGCATA AAAAAAGATC TGGCCTACCG CTCTTGGGTC
ACTTCCCACG GTGGGGTCTA TGTACCGATA ACCGAACATA CCCAACCCAA CCCATATCTG
GCTCATATCC CCAACCGTGA TATAAAAACA GAGACTGGCC AGGGGTTAAC ACTCATGAAC
CCTGCTTACG CAATCAAGCA GACGATGAAA AACTACTCTG AGCTTTACGG AACGAAGGGA
CGCATAGTCA GTAATACACC ACTCAACCCC GACAATAAAG CCGATAAGTG GGAATCTGAC
TCTCTGAATA TTATCGAAGA TACAAGAACT CCCCATCACG AAATCCACCC CATCGATGGC
CAGGAGCATA TGAGGCTTAT TATCCCGCTA TTTACCGAAG AGGGATGCTT AAAATGTCAC
GGTCATCAAG GCTATAAGGT TGGTGATGTG CGTGGTGGAA TATCGGCGTC GATTGCACTC
TCTCCCTATT ACACTAGTGC TGTTTCACGC TTGAAAGCCA GCCTCCCCTA TGTTGCCGTA
GTGTGGTTAA TCGGCGTGGC AACAATCTTA CTCGGATACT GGCGCACCAG GCGCTATATC
TCAGAAAAAA TCGCCAGTTA TGAGCAACAT ATTTTTTCCA TCGTCGACAT GATAGAGAAC
CGCGACAGCT ATACCGCCGG CCATACTAAA CGTGTTGGAA AATATGCATC TCTTATCGCA
AAGCAGATGG GCTACAGCGA CAGAGCCATA GATAAACTCT ATCGCGCATC TATGGTTCAC
GATGTGGGCA AAATATCCAC ACCCGACTCA ATCCTGCTGA AACCGGGAAG GCTATCACCC
TTAGAGCGTA AAATAATTCA GCAACATGTA GTAACCAGTT ACCAGATGTT AAAGCGGGTG
GATATCTTCC AGGGGATTGC AGAGATAGTG CGTCATCACC ATGAACACTA TGATGGCTCT
GGCTACCCCC AGGGTCTGAA AGGTGAACAG ATCCCTATGC TGTCACAAAT TATGAGTGTT
GCCGATGCGT TCGATGCCAT GACGACCGAT CGTGTCTACA AGGGCAGAAA AACGATTCAA
TCAGCACTCG AAGAGCTTCA ACTGCTGGGG GGTAAACAGT TTAACGCTGA AGTCGTTAAG
GCAGCTCAGA TAGCCTTGAA AGGTGTCGCC AGCCCGAAAT CAAACCAGCT ACCGGTAAAT
GAGATAGAGA AAGAGCGGTT TGCCTACTTC TATAAGGACC AGTTAACCGG CGCCTATAAT
CGTGACTACC TGAACAATAT GCTTCTGATC AACAGTGACA AGTATAGCGA GGCCCCATAC
AACTGCATCA ACCTGATTTT ACTGACCAAT TTCACCCAGT ACAATAAAGA ACAAGGTTGG
GAAAAAGGCA ATAAGATACT TATCGATGTG ACACAATCCT TGATATTTTC ATTTCCTGAG
GCATTGATAT TCAGGATACA CGGTGATGAT TTTATCGTGT TGCATAAGCA ACACTATCCA
ATCGAGGGGG AGTTAGGCCC GATTGATGCC CTACTGTGCG ACACAGGAAT TTCACTGGAT
ACTCTGCATG TCAATATAAA GGAGGACTGC ATCGGCTCAG TAGATAAGCT CGATAACTGG
CTAACATTAA ATAGCGATGA AACGGGTAGC AGAGCCCATG ACAGGATTAG TGTTAATCGG
TAA
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| Protein sequence | MNTKVTYLKF IVVTLFLIWT ILIVSILINW FSQENRHAER LALKEATVSI KKDLAYRSWV
TSHGGVYVPI TEHTQPNPYL AHIPNRDIKT ETGQGLTLMN PAYAIKQTMK NYSELYGTKG
RIVSNTPLNP DNKADKWESD SLNIIEDTRT PHHEIHPIDG QEHMRLIIPL FTEEGCLKCH
GHQGYKVGDV RGGISASIAL SPYYTSAVSR LKASLPYVAV VWLIGVATIL LGYWRTRRYI
SEKIASYEQH IFSIVDMIEN RDSYTAGHTK RVGKYASLIA KQMGYSDRAI DKLYRASMVH
DVGKISTPDS ILLKPGRLSP LERKIIQQHV VTSYQMLKRV DIFQGIAEIV RHHHEHYDGS
GYPQGLKGEQ IPMLSQIMSV ADAFDAMTTD RVYKGRKTIQ SALEELQLLG GKQFNAEVVK
AAQIALKGVA SPKSNQLPVN EIEKERFAYF YKDQLTGAYN RDYLNNMLLI NSDKYSEAPY
NCINLILLTN FTQYNKEQGW EKGNKILIDV TQSLIFSFPE ALIFRIHGDD FIVLHKQHYP
IEGELGPIDA LLCDTGISLD TLHVNIKEDC IGSVDKLDNW LTLNSDETGS RAHDRISVNR
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