| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3266 |
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| Symbol | |
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| ID | 5613224 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3965260 |
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| End bp | 3966879 |
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| Gene Length | 1620 bp |
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| Protein Length | 539 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640934204 |
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| Product | putative uncharacterized dehydrogenase |
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| Protein accession | YP_001474998 |
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| Protein GI | 157376398 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2509] Uncharacterized FAD-dependent dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.346761 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.703083 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATACGCC TCTCTAATAT TAAACTCGAC CTCGATCACT CTCCAGAAGA GCTGACTCAA
GCTATCTTAA CCATGCTTAA CATTGCGGCC GATGAGCTGG TTGAAACTGT GGTGTTTCGT
CGTGGCATCG ATGCCCGAGC TAAAAACCGT ATCTTCCTGC TTTATACACT CGATGTCACC
ACATCGAAAG ATGAAGCCCT GCTTGAGCAG TTTGCTGATA ATCAGTCGAT TAAACCAACG
CCTGATATGA GCTATAAGTT TGTCGCTCAG GCGCCAGAAG ATCTTGGTGA GCGCCCAGTG
GTGGTTGGCT TCGGTCCATG TGGTATTTTT GCCGGTTTAG TGTTGGCGCA GATGGGTTAC
AAGCCGATTA TCCTTGAGCG TGGTAAAGAG GTGCGTGAGC GCACTAAAGA TACCTTTGGG
TTTTGGCGCA CCAAGAAGTT AAACACAGAA TCGAATGTGC AATTTGGTGA AGGCGGCGCG
GGGACCTTCT CTGACGGTAA GCTCTGGACC CAGATTAAAG ATAAGAAACA TTATGGACGT
AAGGTACTCA ATGAGTTTGT TGCCGCAGGC GCTCCCGAAG AGATCTTATT TGTCAGTAAG
CCACATATTG GTACCTTTAA GTTGGTGAGC ATGGTCGAGA AGATGCGCGC TAAGATTATC
GAGTTAGGTG GCGAAATTCG TTTCAGCGCT CGGGTAGACG ATTTTCATAT CGAAGATGGA
CAGGTACTCG GCCTTACTTT AGCGGACGGT ACTCAAATCA AGTCGAAGCA TATCGCTTTG
GCCATAGGTC ACAGTGCCCG TGATACTTTC AAGATGATCT ACGACAGCGG TATTTACATC
GAAGCTAAGC CGTTCTCGGT TGGGTTCAGG ATCGAGCATA AACAATCTGT TATCGATGAA
GCTCTGTTTG GTAAATTTGC CGGTCACCCT ATTTTAGGTG CGGCAGATTA CAAGCTCGTT
CACCATTGTA AGTCAGGCCG CTCAGTGTAT AGCTTCTGTA TGTGCCCAGG TGGCACTGTA
GTCGCGGCAA CCTCTGAGGA GCATGCGGTA GTCACTAATG GTATGAGTCA GTATTCACGT
AATGAACGCA ACGCCAACAG CGCCATTGTG GTCGGTATCG ATCCAGACGA TTACCCGGAA
CATCCATTGG CGGGCATCGA GTTACAACGT CAACTTGAGA AAGCGGCTTA TGTGCTTGGT
GGTGAGAATT ATGATGCGCC GGCTCAGTTA GTCGGAGACT TCTTAACCGG GACTTCGTCT
GCTGCAATTG GTGGTGTAGA ACCCTCTTAT AAGCCGGGTA TTAAGCTGAC GGATATGACG
GGCCTGTTAC CGCAATACTG CGTCGATGCG ATTCGTGAAG CTATTCCTGC CTTTAATAAA
AAGATCCGTG GATTCGCCAT GGAAGATGCA ACCTTGACCG GCGTTGAGAC CCGTACCTCT
TCACCTATCT GCATCAAGCG TAGCGATGAT TTCCAGAGTA TCAATACCAA GGGTTTCTAC
CCATCTGGTG AGGGTGCCGG ATACGCGGGC GGCATTATGT CATCTGCCAT CGATGGTATT
AAAGTGGCTG AGGCAATGGC CTTAAGTATC AATGAGCAAG CAGACAGCAA ATCAGCGTAG
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| Protein sequence | MIRLSNIKLD LDHSPEELTQ AILTMLNIAA DELVETVVFR RGIDARAKNR IFLLYTLDVT
TSKDEALLEQ FADNQSIKPT PDMSYKFVAQ APEDLGERPV VVGFGPCGIF AGLVLAQMGY
KPIILERGKE VRERTKDTFG FWRTKKLNTE SNVQFGEGGA GTFSDGKLWT QIKDKKHYGR
KVLNEFVAAG APEEILFVSK PHIGTFKLVS MVEKMRAKII ELGGEIRFSA RVDDFHIEDG
QVLGLTLADG TQIKSKHIAL AIGHSARDTF KMIYDSGIYI EAKPFSVGFR IEHKQSVIDE
ALFGKFAGHP ILGAADYKLV HHCKSGRSVY SFCMCPGGTV VAATSEEHAV VTNGMSQYSR
NERNANSAIV VGIDPDDYPE HPLAGIELQR QLEKAAYVLG GENYDAPAQL VGDFLTGTSS
AAIGGVEPSY KPGIKLTDMT GLLPQYCVDA IREAIPAFNK KIRGFAMEDA TLTGVETRTS
SPICIKRSDD FQSINTKGFY PSGEGAGYAG GIMSSAIDGI KVAEAMALSI NEQADSKSA
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