Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3265 |
Symbol | |
ID | 5613223 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3964436 |
End bp | 3965134 |
Gene Length | 699 bp |
Protein Length | 232 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640934203 |
Product | putative ribosomal small subunit pseudouridine synthase A |
Protein accession | YP_001474997 |
Protein GI | 157376397 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.777332 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.943696 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGGCTTG ATAAATTTTT GTGTAAGAGT ACTGAACTGA CTCGCATTGA GGCGACGGCA TTAATTGTTG CTGGTGAGGT GCTCGTCAAT GGGCAAACTG TCACATCGGC GTCGACTCAG GTGCATGAAA ATAACCGGAT CACCTTGGAT GGGCAAGTGC TCACCCCACG AGCCTCACGA TATATCATGA TGCACAAGCC CCTCGATACT CTCAGCTCAA ATGTCGATGG CGATTATCCC TCTGTGATGA ACTGCCTCGA TGTCGATAAG GTGTGTGACC TTCATATTGC CGGACGTTTA GATGCCGATA CCACAGGTTT AGTCTTGGTC ACCGATGATG GGCGTTGGTC GTTTAATATT ATTAACCCTA AGTATCATTG TGAAAAAGTT TATCGGGTTA GTTTGCGCGA TCCTATTAAT GATGATGTTG CCGGGAAATT TGCCTGCGGG GTTCAGCTTC AGGGGGAAGC GTCACTGACT CTACCGGCAA AGCTTGAGGT GGTGAGCCCA ACAGAGGTGC TATTAACCAT CACGGAAGGC AGATACCATC AGGTAAAGCG CATGTTTGCC GCCGTGGGGA ATCGGGTTAA CGGCCTGCAT CGACAGCAAG TTGGCGATAT CAAACTGGAT ATTGGGCTCG GACAGTGGCG GTATCTGACA ACTGAAGAGA TTAACTCATT TTCCGTGCTC CAGTTATAG
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Protein sequence | MRLDKFLCKS TELTRIEATA LIVAGEVLVN GQTVTSASTQ VHENNRITLD GQVLTPRASR YIMMHKPLDT LSSNVDGDYP SVMNCLDVDK VCDLHIAGRL DADTTGLVLV TDDGRWSFNI INPKYHCEKV YRVSLRDPIN DDVAGKFACG VQLQGEASLT LPAKLEVVSP TEVLLTITEG RYHQVKRMFA AVGNRVNGLH RQQVGDIKLD IGLGQWRYLT TEEINSFSVL QL
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