| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3262 |
|---|
| Symbol | |
|---|
| ID | 5614143 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3960467 |
|---|
| End bp | 3961828 |
|---|
| Gene Length | 1362 bp |
|---|
| Protein Length | 453 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640934200 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001474994 |
|---|
| Protein GI | 157376394 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.931902 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAGTA AAAGAAGAGT ATTAATCACT GTTTACCTTT TCTTAGCGGT AGTGTTCTGT
CTGCTGAGCG GGTCCGTTTA TTTTCATTAT GACGTAAACG ATAAGGCACA TTATGTCACC
TCACAGGAGT GTCAGCAGTG CCACAGTGTC AGATATGACT CCTGGAAAAA TCAAACATTG
CATCCCGTCA TGTTTCATCC CATTAATAAT CTGGATGAGA TACAAGGTGA TTTTGACATC
GATACCCCTG TTGTCACCTT TAAAAAAGAG GAGGTTGAAT TTGTCATAGG CAATAAGTGG
GAGCAGGTCT ATGCCAGAAT GATCGATGGC GAATATTATC TATTCCCTGC CAAATGGCTG
ATAACGACTC AACAATGGAT CCCATATAAA GTTGATAGTT GGAGAGATAC TCCTATGTCG
ACCAATTGTA ATGGTTGCCA TACCACAGGG TTTAATTCCG AAACCTATGA ATTTTCTGAG
TATGGGATAG GTTGTGAAGC CTGTCATGGG CAGGCGAGTA AACACGTAAA GCTGCAACAG
CGACTCGCCC CCGATACCCT GTGTAGCCTT TGTCATGCTA ATGATCTCCC CCCTGAGGAT
AAAGAGATAA TCGTGTCGAT TAAAAACTCC GTCTGCGGAC AGTGTCATAG CCGAGGTCAG
CAGAGTCGAG GGAACGAGCA CATGCAAACC AGCTTTAATT TTCCGTTGAA CTATAAACCC
GGAGAAGCGC TGCCAGCCGA TTATCAGCAA TCAACGAAGC AAAACGACAG TAAAGGCAAA
AATTGGTGGG CTACGGGCTT ATCAAAAAAC AGGCATCAGG AATTTGCGGA CTTTTCGGTA
TCGGCGCATA GCAAGTCTCT TCGAAACTTG AAAGAGAAAA TGACACCAGA CAGAGGTGAA
CTCACCGATG AGTGTCTCGA GTGCCACTCG GCAGATTATC GGTTTGCAGA AGAGGGCAGT
AAACCAACAC TCGAAACGGC TCAGGAGGGA ATAACTTGTG TGGTTTGCCA CGATCCCCAT
GGATTAGACC GTGAATTTAA ATCATTACAT GTGAGTGCCG AGCGTTGTGG CTCCTGTCAT
CTCGATAGTT TTTCAAATAA GGCTGCCGAT ACAGGCAGGG CGCATAGCCC CTGTCCACCG
AGTGCGGCGA TCTGTGCCGA TTGTCATATG CCCTACATTA TTAAATCCGG CGGAGCATTT
CCTATTCGTA GTCATGCTTT TAAAATTGTA CCACCTGCTG CTACTGAGGC ACTGAATATG
CCTAACTCCT GTCAGAATGG GGGGTGTCAC GAGGATAAAA CATTAGAGTG GGCTAAGCAG
GCCTTCGATG AACATTATCC GGAATATACC GGAAATGAAT AG
|
|---|
| Protein sequence | MKSKRRVLIT VYLFLAVVFC LLSGSVYFHY DVNDKAHYVT SQECQQCHSV RYDSWKNQTL
HPVMFHPINN LDEIQGDFDI DTPVVTFKKE EVEFVIGNKW EQVYARMIDG EYYLFPAKWL
ITTQQWIPYK VDSWRDTPMS TNCNGCHTTG FNSETYEFSE YGIGCEACHG QASKHVKLQQ
RLAPDTLCSL CHANDLPPED KEIIVSIKNS VCGQCHSRGQ QSRGNEHMQT SFNFPLNYKP
GEALPADYQQ STKQNDSKGK NWWATGLSKN RHQEFADFSV SAHSKSLRNL KEKMTPDRGE
LTDECLECHS ADYRFAEEGS KPTLETAQEG ITCVVCHDPH GLDREFKSLH VSAERCGSCH
LDSFSNKAAD TGRAHSPCPP SAAICADCHM PYIIKSGGAF PIRSHAFKIV PPAATEALNM
PNSCQNGGCH EDKTLEWAKQ AFDEHYPEYT GNE
|
|---|
| |