Gene Ssed_3262 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3262 
Symbol 
ID5614143 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3960467 
End bp3961828 
Gene Length1362 bp 
Protein Length453 aa 
Translation table11 
GC content46% 
IMG OID640934200 
Producthypothetical protein 
Protein accessionYP_001474994 
Protein GI157376394 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.931902 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAGTA AAAGAAGAGT ATTAATCACT GTTTACCTTT TCTTAGCGGT AGTGTTCTGT 
CTGCTGAGCG GGTCCGTTTA TTTTCATTAT GACGTAAACG ATAAGGCACA TTATGTCACC
TCACAGGAGT GTCAGCAGTG CCACAGTGTC AGATATGACT CCTGGAAAAA TCAAACATTG
CATCCCGTCA TGTTTCATCC CATTAATAAT CTGGATGAGA TACAAGGTGA TTTTGACATC
GATACCCCTG TTGTCACCTT TAAAAAAGAG GAGGTTGAAT TTGTCATAGG CAATAAGTGG
GAGCAGGTCT ATGCCAGAAT GATCGATGGC GAATATTATC TATTCCCTGC CAAATGGCTG
ATAACGACTC AACAATGGAT CCCATATAAA GTTGATAGTT GGAGAGATAC TCCTATGTCG
ACCAATTGTA ATGGTTGCCA TACCACAGGG TTTAATTCCG AAACCTATGA ATTTTCTGAG
TATGGGATAG GTTGTGAAGC CTGTCATGGG CAGGCGAGTA AACACGTAAA GCTGCAACAG
CGACTCGCCC CCGATACCCT GTGTAGCCTT TGTCATGCTA ATGATCTCCC CCCTGAGGAT
AAAGAGATAA TCGTGTCGAT TAAAAACTCC GTCTGCGGAC AGTGTCATAG CCGAGGTCAG
CAGAGTCGAG GGAACGAGCA CATGCAAACC AGCTTTAATT TTCCGTTGAA CTATAAACCC
GGAGAAGCGC TGCCAGCCGA TTATCAGCAA TCAACGAAGC AAAACGACAG TAAAGGCAAA
AATTGGTGGG CTACGGGCTT ATCAAAAAAC AGGCATCAGG AATTTGCGGA CTTTTCGGTA
TCGGCGCATA GCAAGTCTCT TCGAAACTTG AAAGAGAAAA TGACACCAGA CAGAGGTGAA
CTCACCGATG AGTGTCTCGA GTGCCACTCG GCAGATTATC GGTTTGCAGA AGAGGGCAGT
AAACCAACAC TCGAAACGGC TCAGGAGGGA ATAACTTGTG TGGTTTGCCA CGATCCCCAT
GGATTAGACC GTGAATTTAA ATCATTACAT GTGAGTGCCG AGCGTTGTGG CTCCTGTCAT
CTCGATAGTT TTTCAAATAA GGCTGCCGAT ACAGGCAGGG CGCATAGCCC CTGTCCACCG
AGTGCGGCGA TCTGTGCCGA TTGTCATATG CCCTACATTA TTAAATCCGG CGGAGCATTT
CCTATTCGTA GTCATGCTTT TAAAATTGTA CCACCTGCTG CTACTGAGGC ACTGAATATG
CCTAACTCCT GTCAGAATGG GGGGTGTCAC GAGGATAAAA CATTAGAGTG GGCTAAGCAG
GCCTTCGATG AACATTATCC GGAATATACC GGAAATGAAT AG
 
Protein sequence
MKSKRRVLIT VYLFLAVVFC LLSGSVYFHY DVNDKAHYVT SQECQQCHSV RYDSWKNQTL 
HPVMFHPINN LDEIQGDFDI DTPVVTFKKE EVEFVIGNKW EQVYARMIDG EYYLFPAKWL
ITTQQWIPYK VDSWRDTPMS TNCNGCHTTG FNSETYEFSE YGIGCEACHG QASKHVKLQQ
RLAPDTLCSL CHANDLPPED KEIIVSIKNS VCGQCHSRGQ QSRGNEHMQT SFNFPLNYKP
GEALPADYQQ STKQNDSKGK NWWATGLSKN RHQEFADFSV SAHSKSLRNL KEKMTPDRGE
LTDECLECHS ADYRFAEEGS KPTLETAQEG ITCVVCHDPH GLDREFKSLH VSAERCGSCH
LDSFSNKAAD TGRAHSPCPP SAAICADCHM PYIIKSGGAF PIRSHAFKIV PPAATEALNM
PNSCQNGGCH EDKTLEWAKQ AFDEHYPEYT GNE