| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3261 |
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| Symbol | |
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| ID | 5614142 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3958393 |
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| End bp | 3960501 |
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| Gene Length | 2109 bp |
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| Protein Length | 702 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640934199 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_001474993 |
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| Protein GI | 157376393 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.012427 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACATTA TCCGGAATAT ACCGGAAATG AATAGGTTAC CAACAAAGAG TAAGTTAACT
AAATACTTTC CCTTCATGAA GAAGATAGGT TACAAGCTCA CGGGGAGTTT CCTTGTGGCT
ATTCTGTTTG TACTTGCGGT TGGCCTGTTT TTCAATTTGA AAATGGTTCA GAGTAATTAT
TCACACCTGA TGAATTCAGA GTTTCAAGGC ATTTTAGATG CTCATGAGTT TGCAATGAAA
CAGTATGTCA CCGCGTCCGA GACCTGGTCC AAGCATTTAG CGGATGAAAA TGAGCTTAGA
GATATTTTAA GCCGTTCCGA ACTGTCTGCA GCGAATACAG AACATTTCTT TAAGGAGCAT
GAGGTTGTTT TCTTCGAGAG CACATTTGTT AATCTTCTCG ACAACAAGGG AAAGGTGATC
TATTGCTCCC ATCAATGTGA ATATCTCGGG AACTCGTTTT TAGGCGTTGA ACTTATCCGG
CAGGTGAGAA GAGCATTAAC GACTAAGAGT GCGATTGTCG GAGATAGCGA CAAGTTTGCA
TTTTATGCTG CCAGCCCGGT ATTTAAAAAG GGCTCGACGA CCGAGAGTAT AGGCTTTGTC
ATTGTTGGGA AGATTATCGA TGATAATTAC CTGTCGAATA TTCAATTGGG TGATGATGAC
ATTGAGATGG CCATCGTTCG AGACAGGGCG GTAATGGCCT CGACAATAAA AATCGATGGT
GAACCGCTTA TCGATATTCC TCTGCCTTAT TTGGAATATC TGCAGCTATT AAAGAAAACT
GATGCAATCA TTGAGATCAC GTTTTCAAAA CAGAAGTATT TTGTAACCGC TAAAAATCTT
GTTCAAATGA GTGGGGGGAT GCCGGGTTCT ATTTTACTGT TGAAGCCTCG TAAAGAGCTT
GAAAGTATCG AGTCTGCACT GTTTTCTCAA TATATGTACC TGACGCTCTT GTCTTTAGTG
ATCATAATTG TATTAGGTAC AGTCATCACC AGACGCCTTC TATCTCCGGT GATCAATCTA
ACGAAAGCCT CTATCGAGGT TGCCAGTGGA AAACAGGGGA TAAGGGCCGA AATCCAGAGC
AGTGACGAGT TTGCCGTATT GGCCAGAAAT TTCAATACCA TGCTGGTAAC CATAGAGGAG
CAGCACTGCT TTATCCAAAA GCAAAATGAA TCATTGGAGG AGCGGGTCGA GGAGAGAACA
CAAGATCTGC ACCTTGTGAT GAATGATTTG AAAAAGCTGA CCGTTGCCGT TGAGAAAAGC
CCTGTTGGCA TGCTCATCAC CGATTCGACG GGAATTATAG AGTACGTCAA CCCAATGTTT
ACAGAGCTGT CCGGCTATTC CAGGGAGGAG GCTGTGGGGC AAACGCCGCT AATATTACAG
TCAGAACATA CCAGTGAAGA TAAGATTAAA CAGCTCTGCC AACAGGTCTC TCAGGGACAT
TCCTGGCGGG GAGAGTTTTT GAATAAGACG AGTCATGAAC AGCTGCTGTG GCATAGAGTG
TTGATCACGC CAATTACGAA TGAGGATGGT CTGATATCTC ATTACTTAGG GTCGATAGAA
GATATTACCG AGAAGAAAGA GAGCGAGGAG AAGCTAATTC AGCAGGCAAC GTTTGATACC
TTAACTCAGT TACCTAATCG CTTCTTGGCC GAATACCGCC TGAATCAAAC ACTCTCAGCC
GCCCAAAGAG ACGGCAAGAA AGGTGCCCTG CTGTTCCTCG ATTTAGATAA CTTTAAAGAG
GTGAACGATA CTCTGGGGCA TCATGCCGGG GATGAGCTTT TGAAAAGAGT GGCGACCTTG
ATGAAGAATG CAGTAAGAAA AGAGGATACC GTTGCTCGCC TCGGTGGCGA TGAGTTTCTG
GTGATATTGA ATCATATTCA AAAACGTGAG GATGCTGAGT CTGTAGCCGG TAAAATTATC
AAATTGGTCG CACAAGAACC TCTGATTGAA AATTGTTCCA TAAAGGTGTC AGCCAGTATC
GGAATTGCCG TTTTTCCAGA TGATGCGACT AAGGCTAAAA AATTGATGCA AAAGGCTGAT
ACAGCCATGT ATGTGGCCAA AAAACAGGGA AAGAATCGTT TCAGTTTTTT TAAGAGTGAA
GATGAGTAA
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| Protein sequence | MNIIRNIPEM NRLPTKSKLT KYFPFMKKIG YKLTGSFLVA ILFVLAVGLF FNLKMVQSNY
SHLMNSEFQG ILDAHEFAMK QYVTASETWS KHLADENELR DILSRSELSA ANTEHFFKEH
EVVFFESTFV NLLDNKGKVI YCSHQCEYLG NSFLGVELIR QVRRALTTKS AIVGDSDKFA
FYAASPVFKK GSTTESIGFV IVGKIIDDNY LSNIQLGDDD IEMAIVRDRA VMASTIKIDG
EPLIDIPLPY LEYLQLLKKT DAIIEITFSK QKYFVTAKNL VQMSGGMPGS ILLLKPRKEL
ESIESALFSQ YMYLTLLSLV IIIVLGTVIT RRLLSPVINL TKASIEVASG KQGIRAEIQS
SDEFAVLARN FNTMLVTIEE QHCFIQKQNE SLEERVEERT QDLHLVMNDL KKLTVAVEKS
PVGMLITDST GIIEYVNPMF TELSGYSREE AVGQTPLILQ SEHTSEDKIK QLCQQVSQGH
SWRGEFLNKT SHEQLLWHRV LITPITNEDG LISHYLGSIE DITEKKESEE KLIQQATFDT
LTQLPNRFLA EYRLNQTLSA AQRDGKKGAL LFLDLDNFKE VNDTLGHHAG DELLKRVATL
MKNAVRKEDT VARLGGDEFL VILNHIQKRE DAESVAGKII KLVAQEPLIE NCSIKVSASI
GIAVFPDDAT KAKKLMQKAD TAMYVAKKQG KNRFSFFKSE DE
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