| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3260 |
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| Symbol | |
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| ID | 5614189 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3957500 |
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| End bp | 3958384 |
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| Gene Length | 885 bp |
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| Protein Length | 294 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640934198 |
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| Product | AraC family transcriptional regulator |
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| Protein accession | YP_001474992 |
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| Protein GI | 157376392 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGCA TCAAAAATGT ACCTAATGTT GAATTTCGAG CGCCTAACAT TCAAAAATCA
GGAGTCGAAG TTTTAGATCT CGATATTTTT TATAAGAAGT TGTCTCAGTG TAAATTCGAT
CCTTCAAAAC CTCATCGAAT TAACTACTTT TGCTTTATCT ATATAACTGA AGGTGAAGGT
GGGCACTTCA TTGACTTTCA GTATCATACC TTTCAGAAGG GAAGCTTTAT ATTCGTCAAT
AAAAATCAAG TGCATGCGTT TGATTTAGAC AGCCGTCCTC AGGGAAAGAT GATCAATGTG
ACTGAAGCAT TTTTCGACTC AATCCTGACC AATATCCGTC TTCCCCTCTT TACGCCGACT
CATCTGGTGA GTTCATACCT GCCTGTGCTC AACTTGAGTC AGACTTTGAC ACAGACTTGT
GATGCCTTGT TATTGGAGAT AGATAGGGCG CAAACACCGG CTAACAGCGA CCCCCTACTG
ATACAGTTGC TGTTTTCTTC TCTGCTGGTG GCCTTAGCTC GAGAGCGGAA AAGTAATACG
GAGCACCTGA GTGAGACGCA GACGATGCGC TTCAATCAAT TCCTGTTATC AATTGAGGAG
AAGTTCACCC ATACAAGAGA AGCGTCGGCC TATGCGGAGA TACTTCATAT TTCCTATAAG
TCCTTGAACC AACTCTGCAA GCTGGCTTGT GATCAAACCG CTAAACAGCT GATCGATGCT
CACACAATAT TGGAGATTAA GAGAAGACTC ATCATAGATA ACTCTCAGGT ACAGGAGGTC
GCCTATGAGC TCGGCTTCGA TGATGTGACT TACTTCGTTA AGTTTTTTAA GAGACACACT
CTACTCACTC CCTCTCAGTT CAAAGAATAT TCCAAGGCGA AATAA
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| Protein sequence | MKSIKNVPNV EFRAPNIQKS GVEVLDLDIF YKKLSQCKFD PSKPHRINYF CFIYITEGEG
GHFIDFQYHT FQKGSFIFVN KNQVHAFDLD SRPQGKMINV TEAFFDSILT NIRLPLFTPT
HLVSSYLPVL NLSQTLTQTC DALLLEIDRA QTPANSDPLL IQLLFSSLLV ALARERKSNT
EHLSETQTMR FNQFLLSIEE KFTHTREASA YAEILHISYK SLNQLCKLAC DQTAKQLIDA
HTILEIKRRL IIDNSQVQEV AYELGFDDVT YFVKFFKRHT LLTPSQFKEY SKAK
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