| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3258 |
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| Symbol | |
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| ID | 5614187 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3953508 |
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| End bp | 3955154 |
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| Gene Length | 1647 bp |
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| Protein Length | 548 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640934196 |
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| Product | amidohydrolase 3 |
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| Protein accession | YP_001474990 |
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| Protein GI | 157376390 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1574] Predicted metal-dependent hydrolase with the TIM-barrel fold |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.826014 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAA TAATAAAATC ACTTCTCGCC AGTAGCATCA TTCTCAGCTT TAGCTCGTTC
GCCGAAACGA GTTTAATCAC TAATATCAAA GGTTACAGTG TCAATGATGG CAAGCTGACT
CAGTTTAAGG CTATCACGTT TAAAGGGGAC AAGATCGATA GGCTTTTTGG CCAAGATGAG
CCGTTACCCG ATGATGCGGA TATTAAACAT ATCGATGGTC AGGGACAAAC CATGCTGCCG
GGACTGATAG ATGCCCACGG ACATGTATTG GGCTACGGCC TCAGTCTGAT GCGGGTACAA
CTCAGGGGGG CTAAATCTGA GCAAGATGCG GTGGAGCGGG TACAGTTATT TCGCGTCGAA
AACCCTGAGC TTAACTGGAT CCAGGGACGA GGTTGGAACC AGGTACTCTG GCCTGAAAAG
TCATTTCCAA CGGCAGCGAC CCTGGACAAA CACTTTCCCG ATACGCCGGT TTGGCTCAGG
CGTATCGATG GTCATGCGGG CTGGGCGAAC AGCGCTGCCA TGAAGTTGGC CAATATTGGC
ACTCAAACTC AGTCTCCAAA AGGTGGAGAG ATCGTCCGTG ATGCTAACGG AGAACCTACC
GGGGTGTTTA TCGATAATGC CATGGAGCTT GTCACCGAGA ATATTCCCTC TCTGACACGC
TCTGAACAAA AGAGTGTGCT GCTAACCTCG ATGAATGCAC TGGCAAAGCT TGGACTCACC
AGTGTTCATG ATGCCGGCGT GGGAAGCATG ACCCTCGAGG TTTACCGGTC GTTAGCCCAG
TCAGAACAGA TGCCGATACG CGTCTATGCC ATGGTCTCGG CAGCAGATGA GCAGTTTGAG
AGCTTGATGG AGAAGGGGCC TTATCAGGAT CCCAGAGACA AGCTGGTCAT CAGCAGCGTG
AAAATATCCT CCGATGGCGC CTTAGGTAGC CGCGGGGCTG CACTCATCGA AGATTACAGC
GATCTCCCCG GTCACAAAGG TCTACTTCTG TACTCAGATG GCAAGCTGAC AAATACCATG
AAGATGGCAA TGGAGGCGGG TTTTCAGGTT AACACTCATG CCATCGGTGA TAATGCCAAT
AAACTTGTGC TGGATAATTA TGAAGCTCTG ATTAAACAGA CCGGTACCCG GGATTTAAGA
CACAGGATCG AGCATGCTCA GGTATTAAGA CTCGATGATA TCCCTCGATT TGCAAAGCTT
AATGTCATCG CCTCTATGCA AGCGACCCAT GCCACCAGTG ATAAGAATAT GGCTGAAGAG
AGACTCGGTA GTGAGCGTAT TAAGGGGGCT TATGCCTGGC GAAAGTTGCT CGACTCCGGT
GCGATAATTG CGGCCGGTTC CGATTTTCCG ATAGAGTCGG CTAACCCTTT CTTTGGTCTG
CACGCCTCCG CGACAAGGCA AGACCAGCAA AATTTGCCCG AGGGCGGCTG GTATAGTCAG
GAGAAGATGA CGCTTAGTGA AGCATTGAAT AGTTTTACCC GTGATGCCGC GTTCTCAGCC
CATCAAGAAA AACAAATTGG TCAACTCAAA CCCGGTATGA AGGCCGACTT CATCTTAATC
GATAGCGATA TCTTTAACAT TGAACCTGAG AGTCTATGGC AGACAAAGGT CAATCAAACC
TGGGTAGACG GAGTGAGAAT TTACTGA
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| Protein sequence | MKKIIKSLLA SSIILSFSSF AETSLITNIK GYSVNDGKLT QFKAITFKGD KIDRLFGQDE
PLPDDADIKH IDGQGQTMLP GLIDAHGHVL GYGLSLMRVQ LRGAKSEQDA VERVQLFRVE
NPELNWIQGR GWNQVLWPEK SFPTAATLDK HFPDTPVWLR RIDGHAGWAN SAAMKLANIG
TQTQSPKGGE IVRDANGEPT GVFIDNAMEL VTENIPSLTR SEQKSVLLTS MNALAKLGLT
SVHDAGVGSM TLEVYRSLAQ SEQMPIRVYA MVSAADEQFE SLMEKGPYQD PRDKLVISSV
KISSDGALGS RGAALIEDYS DLPGHKGLLL YSDGKLTNTM KMAMEAGFQV NTHAIGDNAN
KLVLDNYEAL IKQTGTRDLR HRIEHAQVLR LDDIPRFAKL NVIASMQATH ATSDKNMAEE
RLGSERIKGA YAWRKLLDSG AIIAAGSDFP IESANPFFGL HASATRQDQQ NLPEGGWYSQ
EKMTLSEALN SFTRDAAFSA HQEKQIGQLK PGMKADFILI DSDIFNIEPE SLWQTKVNQT
WVDGVRIY
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