Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3248 |
Symbol | |
ID | 5612786 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 3941930 |
End bp | 3943351 |
Gene Length | 1422 bp |
Protein Length | 473 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640934186 |
Product | hypothetical protein |
Protein accession | YP_001474980 |
Protein GI | 157376380 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00196068 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAACAT TCATCCAATG GTGTTACCTA TCCCTATTGA TAGTTTTCAC TCCGGTGGCA CTGATTCAAG ATGTCAGTGC CCAAGAGTTA AACAGTAACA CGGCGCAATC AGCCTTTAGT GAAGCTGAGC TCGAGCAGAT GCTTGCCCCC ATCGCCCTAT ATCCGGACAG TCTGCTCACT CACATACTCA TCGCGGCAAC CTATCCTCTG GAAGTGGTGG AAGCCAGTCG ATTGCAGAGT ACAAATACGC TTCTGCCAGC CGAGCAGTTA ATGGAGAAGG CAGAGGGAAA AGAGTGGGAT CCCAGTGTCA TCGCCCTGCT CGCCTTCCCG AACGTGCTGG AAAAGCTCAG TAACGACTTA ACCTGGACTC AAAAGCTGGG TGATGCATTC CTTCAAGATG AAGCCCGATT ACTCGCTAGT ATTCAATCAT TGAGACAGCA AGCCGATGAG GCCGATAGCT TGTCAGAGAT GGACAATGTA TCGGTGACAC GGGTTAACAA TCAGATTGTC ATTGAGCCTG CACAACCCGA GGTGATCTAT GTACCCTACT ACGATCCCAG AGTCGTCTAT GGACATTGGC GCTGGTACCG TTATCCACCA GTGTATTGGA CCCCTTATCC ATATTATGTT CGCCGTCCCT ATGGACATTT TTACTGGAAC ACTGGCGTAC ATATCAGGTT TAACTTCTAT TTCAGTGCGT TCCATTGGAG CAATCACCAT ATTGTGGTGA CGCACCATCA TAATTCACAT CACTATCGTC ACAGAGGCAG AATCGTCACC AGTCACGGGG CTCAACGCTG GCAGCATAAG CCACAGCATA GACGTGGCGT TGCTTACCGC AGTAACCATG TGAAGCAAAG ATATAATAGC CACCGCCCAA GCATGGCGCA TACCAAGCAG GTGAGAAAAG CCGAGCGTCA TCAGCTGAGT CACGCAAAAG CGAGCAACAA CCGACTCCAT AAGGGGAGCA GCCTTGAGCG GAATAACAGT CTTGATAGAA ACAAGAGCCA TCAGCTGAAT CGTAAGTTAG GTAAGAGTCG TGAACAGCAA TTTACTAATA AGCTTCATAA CACTCCCAGC CACAACCAGG TGAAGAGCCA TCAGCGGGTG AAAAGTTATC AGCGAGATGT GAAGAGCCAT CAACCTGCGA AGAGCCATCA GCCCCAACGC TCTACACAGC CAAAGCAAAG CCATCAACGA GATGTGAGGA GCCATCAGCC TGTGAAGAGT CATCAGCCCC AACGCTCTTC ACAACCAAAG CAGAGCCATC AGCGGGTGAA GAGTCATCAA CCCCAACGCT CTATACAACC AAAGCAGAGC CATAACTCCA GCAGGCCGAG TCACTCCACG GCCAATATGA GCAAATCTCA TAAAAGCGGG GGGCATCAAC AAAGCGGCTC CCGGACCAAG ATACGCGATT AA
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Protein sequence | MKTFIQWCYL SLLIVFTPVA LIQDVSAQEL NSNTAQSAFS EAELEQMLAP IALYPDSLLT HILIAATYPL EVVEASRLQS TNTLLPAEQL MEKAEGKEWD PSVIALLAFP NVLEKLSNDL TWTQKLGDAF LQDEARLLAS IQSLRQQADE ADSLSEMDNV SVTRVNNQIV IEPAQPEVIY VPYYDPRVVY GHWRWYRYPP VYWTPYPYYV RRPYGHFYWN TGVHIRFNFY FSAFHWSNHH IVVTHHHNSH HYRHRGRIVT SHGAQRWQHK PQHRRGVAYR SNHVKQRYNS HRPSMAHTKQ VRKAERHQLS HAKASNNRLH KGSSLERNNS LDRNKSHQLN RKLGKSREQQ FTNKLHNTPS HNQVKSHQRV KSYQRDVKSH QPAKSHQPQR STQPKQSHQR DVRSHQPVKS HQPQRSSQPK QSHQRVKSHQ PQRSIQPKQS HNSSRPSHST ANMSKSHKSG GHQQSGSRTK IRD
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