Gene Ssed_3248 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3248 
Symbol 
ID5612786 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3941930 
End bp3943351 
Gene Length1422 bp 
Protein Length473 aa 
Translation table11 
GC content50% 
IMG OID640934186 
Producthypothetical protein 
Protein accessionYP_001474980 
Protein GI157376380 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00196068 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAACAT TCATCCAATG GTGTTACCTA TCCCTATTGA TAGTTTTCAC TCCGGTGGCA 
CTGATTCAAG ATGTCAGTGC CCAAGAGTTA AACAGTAACA CGGCGCAATC AGCCTTTAGT
GAAGCTGAGC TCGAGCAGAT GCTTGCCCCC ATCGCCCTAT ATCCGGACAG TCTGCTCACT
CACATACTCA TCGCGGCAAC CTATCCTCTG GAAGTGGTGG AAGCCAGTCG ATTGCAGAGT
ACAAATACGC TTCTGCCAGC CGAGCAGTTA ATGGAGAAGG CAGAGGGAAA AGAGTGGGAT
CCCAGTGTCA TCGCCCTGCT CGCCTTCCCG AACGTGCTGG AAAAGCTCAG TAACGACTTA
ACCTGGACTC AAAAGCTGGG TGATGCATTC CTTCAAGATG AAGCCCGATT ACTCGCTAGT
ATTCAATCAT TGAGACAGCA AGCCGATGAG GCCGATAGCT TGTCAGAGAT GGACAATGTA
TCGGTGACAC GGGTTAACAA TCAGATTGTC ATTGAGCCTG CACAACCCGA GGTGATCTAT
GTACCCTACT ACGATCCCAG AGTCGTCTAT GGACATTGGC GCTGGTACCG TTATCCACCA
GTGTATTGGA CCCCTTATCC ATATTATGTT CGCCGTCCCT ATGGACATTT TTACTGGAAC
ACTGGCGTAC ATATCAGGTT TAACTTCTAT TTCAGTGCGT TCCATTGGAG CAATCACCAT
ATTGTGGTGA CGCACCATCA TAATTCACAT CACTATCGTC ACAGAGGCAG AATCGTCACC
AGTCACGGGG CTCAACGCTG GCAGCATAAG CCACAGCATA GACGTGGCGT TGCTTACCGC
AGTAACCATG TGAAGCAAAG ATATAATAGC CACCGCCCAA GCATGGCGCA TACCAAGCAG
GTGAGAAAAG CCGAGCGTCA TCAGCTGAGT CACGCAAAAG CGAGCAACAA CCGACTCCAT
AAGGGGAGCA GCCTTGAGCG GAATAACAGT CTTGATAGAA ACAAGAGCCA TCAGCTGAAT
CGTAAGTTAG GTAAGAGTCG TGAACAGCAA TTTACTAATA AGCTTCATAA CACTCCCAGC
CACAACCAGG TGAAGAGCCA TCAGCGGGTG AAAAGTTATC AGCGAGATGT GAAGAGCCAT
CAACCTGCGA AGAGCCATCA GCCCCAACGC TCTACACAGC CAAAGCAAAG CCATCAACGA
GATGTGAGGA GCCATCAGCC TGTGAAGAGT CATCAGCCCC AACGCTCTTC ACAACCAAAG
CAGAGCCATC AGCGGGTGAA GAGTCATCAA CCCCAACGCT CTATACAACC AAAGCAGAGC
CATAACTCCA GCAGGCCGAG TCACTCCACG GCCAATATGA GCAAATCTCA TAAAAGCGGG
GGGCATCAAC AAAGCGGCTC CCGGACCAAG ATACGCGATT AA
 
Protein sequence
MKTFIQWCYL SLLIVFTPVA LIQDVSAQEL NSNTAQSAFS EAELEQMLAP IALYPDSLLT 
HILIAATYPL EVVEASRLQS TNTLLPAEQL MEKAEGKEWD PSVIALLAFP NVLEKLSNDL
TWTQKLGDAF LQDEARLLAS IQSLRQQADE ADSLSEMDNV SVTRVNNQIV IEPAQPEVIY
VPYYDPRVVY GHWRWYRYPP VYWTPYPYYV RRPYGHFYWN TGVHIRFNFY FSAFHWSNHH
IVVTHHHNSH HYRHRGRIVT SHGAQRWQHK PQHRRGVAYR SNHVKQRYNS HRPSMAHTKQ
VRKAERHQLS HAKASNNRLH KGSSLERNNS LDRNKSHQLN RKLGKSREQQ FTNKLHNTPS
HNQVKSHQRV KSYQRDVKSH QPAKSHQPQR STQPKQSHQR DVRSHQPVKS HQPQRSSQPK
QSHQRVKSHQ PQRSIQPKQS HNSSRPSHST ANMSKSHKSG GHQQSGSRTK IRD