| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3247 |
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| Symbol | |
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| ID | 5612785 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3940377 |
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| End bp | 3941786 |
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| Gene Length | 1410 bp |
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| Protein Length | 469 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640934185 |
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| Product | sensor histidine kinase |
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| Protein accession | YP_001474979 |
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| Protein GI | 157376379 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000098482 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAAAC CGTCCTCTCA ATCTCAATCG GAGACCGGAG TTAACCCTAA TAAGGGCCTG
CTTAACTCCC TCAAGGCCAG ACTGGTTGTC AGTGCCCTGC TGTTGATCTT AGTCCTGCTG
CCCCTGATTG GTTTCACTCT TAACGACGCC TTCAAGCAAC AGGTGAAAAG CGCCGCTAAA
AACGAACTCA GCGCTTACCT CTATTCAGTG TTAGCGGTCA CCGAAGTCGA CAATAACCGT
TTACTCATGC CAGAGCTATT GGTGGAAAAT CAATTTAACG TCATTCAATC CGGCTTATAT
GCTCTGATAT CGACACCTGG TAACACATCG GGAATACCAG CTAAACATCT GCTGTGGCAA
TCAAACTCCT TTCTAGCGTC TGAACCGCCT CAACACTTGC CCCATCCGGC AACGGGTCAG
AGTGAGTTTG GCGAAATACT GCTCGAAGGT AAACCCCATA TTATCTACAG CTTCAGCGCC
AGTTTCGAGC AGAGGCAAAA TAAGCAGTTC CCCATCACGA TTCATATCAT CAAAGATCAG
GCCGACTTTC AGCTGCAGAT AGATAAATTT ACCCGCCAAC TCTGGACCTG GTTACTGATC
TTAATGGCAC TCTTGGGCGG CGTGCAGCTG GCTTGGTTGC TCTGGACCTT GAAGCCCTTA
GCTAAGTTTA AACAGGAACT CAGTGATGTC GAACAAGGCC GTGCCATGCA GCTCGAGGCA
GACTACCCAA CAGAGTTGCA AGCCGTGGCG CGCCAGCTTA ATACATTACT CAATACTGAA
CAAAGCCAGC GCAAAAGGTA CCGAAATGCC CTGTCCGATC TGGCCCATAG CCTGAAAACG
CCCTTAGCCG TGATCCAGAG TCAAAAAGAT CTCAGTCAGG GCTCCTTTGA GCAGATAAGC
GTGATCAATA GAATCATTGG CCATCAACTC AAGCGCGCCC AAAGCGCGGC CGGCTCTTCG
TGGCACTTAG GGGTTAAGGT CTGTTCAGTC AGTGAAAAAC TCGTCAGAAC CTTAGGGAAA
ATCTACCGAG CCCCCGAGAT ACAGATCACC GAATCTGTCG ATAGTGAGGC CATCTTTAAG
GGCGATGAGT CCGACCTGAC CGAGATACTG GGTAATCTGC TCGATAATGC CTGCAAAGCG
GCGAAGTCAA AGGTGTTATT AAGCGTCACC TCGAGTGACA CTCAGTTAAA TATAGCGATA
GAAGATGACG GTAATGGGAT AAGTCCCGAG CAACAGAGCC AGATATTCGA GAGGGGCATT
CGCGCCGACT CATACAGCCA AGGTCACGGA ATAGGCCTTG CCATCGTGCG CGATCTTATC
GACAGCTATA ATGGCAAGCT TTCAGTGTCC ACTTCAGAAA GTCTCGGCGG CGCTAAATTT
GAGATAAGCT TCAGCCTTGG GAGAAGGTAA
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| Protein sequence | MSKPSSQSQS ETGVNPNKGL LNSLKARLVV SALLLILVLL PLIGFTLNDA FKQQVKSAAK
NELSAYLYSV LAVTEVDNNR LLMPELLVEN QFNVIQSGLY ALISTPGNTS GIPAKHLLWQ
SNSFLASEPP QHLPHPATGQ SEFGEILLEG KPHIIYSFSA SFEQRQNKQF PITIHIIKDQ
ADFQLQIDKF TRQLWTWLLI LMALLGGVQL AWLLWTLKPL AKFKQELSDV EQGRAMQLEA
DYPTELQAVA RQLNTLLNTE QSQRKRYRNA LSDLAHSLKT PLAVIQSQKD LSQGSFEQIS
VINRIIGHQL KRAQSAAGSS WHLGVKVCSV SEKLVRTLGK IYRAPEIQIT ESVDSEAIFK
GDESDLTEIL GNLLDNACKA AKSKVLLSVT SSDTQLNIAI EDDGNGISPE QQSQIFERGI
RADSYSQGHG IGLAIVRDLI DSYNGKLSVS TSESLGGAKF EISFSLGRR
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