| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3234 |
|---|
| Symbol | |
|---|
| ID | 5614060 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 3926712 |
|---|
| End bp | 3928049 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640934172 |
|---|
| Product | general substrate transporter |
|---|
| Protein accession | YP_001474966 |
|---|
| Protein GI | 157376366 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2271] Sugar phosphate permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTCAA AGAAAAACTT CGATGATATG GAGTTTACTC CACTTCATAG AAAAATAATG
CTTTGGGGAA GCGGAGGTCC ATTTTTAGAT GGCTATGTAT TAGTTATTAT TGGACTTGCA
CTTCAACAAC TTACACCAGA ATTAGGCTTA GATGCACAGT GGATCGGTTT AGTTGGTGCG
GCGACACTGG CCGGTCTGTT TATCGGAACC GCGCTATTTG GCTATGTGGC AGATATAGTC
GGTCGTAAGA AGATGTTTAT GATAGACATT ATTGCAATTG CAGTGCTTTC ATTTGCAACC
ATGTTTATCT CATCTCCTAT AGAGTTAGTC ATCTTACGAT TCTTAATCGG AATCGTTATC
GGAGCCGATT ACCCCATCGC CACCTCTATG GTTGCCGAGT TCTCACCCAC TAAGCAACGG
GCATTCACAA TGGGCTTCAT TGCTGCCATG TGGTACGTTG GTGCTACTGC AGCCAACATG
GTTGGCTACC TTCTCTACGA TGTTCAAGAT GGCTGGAGAT GGATGTTTGG TAGTGCGGTT
ATTCCCTGTC TCGTTATTCT ACTCGGACGT TTTCACCTAC CTGAATCGCC AAGATGGTTA
CTTAAAAAAG GCCGTGTGGA AGAGTGCCGT GAAATAATGC ATAAGTTTTT TGGCAAGGAT
GTCGATATTA GTTTCGAAGA GGCGGAAGAG ACTAAATATA GTAAACTATT TGAACCTATC
TATTTAAAAA GAATTATATT CATCGGCACC ATATGGAGCT GTCAGGTTAT TCCCATGTTC
GCCATATATA CATTTGGGCC TCAAATAATC GAACTGCTTG GATTTACTGA GGGACAAGAT
GCGGCCCTGG GCAATATCGT TATCAGTATA TTCTTTATGG CCGGGTGTAT CCCAGCGATG
TACTGGCTGA ACTCTATCGG TCGCAGACCA CTTTTAATCG GCAGCTTTGC CATTATGACC
GCCTCTCTGG CACTACTTGG CATAGTGCCA AATCCAAGCA TCTGGCTGAT TGTAGGCGCT
TTTGCCATTT ACGCCTTCTT CTCAGGTGGT CCAGGGATCT TGCAGTGGCT CTATCCAAAT
GAGCTGTTTC CTACAGAGAT ACGGGCGTCA GCCGTTGGCG CTGTGATGTC CTTTAGCCGA
ATTGGTACCA TAGTCTCGAC TTATGCCCTG CCCGTTTATA TGGCCACCTA TGGCATATCA
TCGACATTGC TTGTCGGTGC TGCCATATCA CTGATCGGAT TAGTTGTTTC AGTGTTCATG
GCACCAGAAA CAAAAGGATT AACATTAGAA ACAACCAGTT CAGTTGATTT CACAGCTTCA
GCTGAAGTAA GTAGATAA
|
|---|
| Protein sequence | MNSKKNFDDM EFTPLHRKIM LWGSGGPFLD GYVLVIIGLA LQQLTPELGL DAQWIGLVGA
ATLAGLFIGT ALFGYVADIV GRKKMFMIDI IAIAVLSFAT MFISSPIELV ILRFLIGIVI
GADYPIATSM VAEFSPTKQR AFTMGFIAAM WYVGATAANM VGYLLYDVQD GWRWMFGSAV
IPCLVILLGR FHLPESPRWL LKKGRVEECR EIMHKFFGKD VDISFEEAEE TKYSKLFEPI
YLKRIIFIGT IWSCQVIPMF AIYTFGPQII ELLGFTEGQD AALGNIVISI FFMAGCIPAM
YWLNSIGRRP LLIGSFAIMT ASLALLGIVP NPSIWLIVGA FAIYAFFSGG PGILQWLYPN
ELFPTEIRAS AVGAVMSFSR IGTIVSTYAL PVYMATYGIS STLLVGAAIS LIGLVVSVFM
APETKGLTLE TTSSVDFTAS AEVSR
|
|---|
| |