Gene Ssed_3232 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3232 
Symbol 
ID5611632 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3924625 
End bp3925917 
Gene Length1293 bp 
Protein Length430 aa 
Translation table11 
GC content46% 
IMG OID640934170 
ProductFAD dependent oxidoreductase 
Protein accessionYP_001474964 
Protein GI157376364 
COG category[C] Energy production and conversion 
COG ID[COG0644] Dehydrogenases (flavoproteins) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAGAAG AAGCATTTGA CGCGATTATC GTAGGAGCCG GGCTTGCTGG ATGCGTTGCC 
GCTTATGTTT TAGCAAAAGA GGGAGCGGAC GTTCTCGTTA TTGAGCGCGG TAACTATGCC
GGCAGCAAAA ACATGACCGG TGGCCGACTC TATGCTCATA GTCTGGAGAA GATTATTCCC
GGCTTTGCTA AAGAAGCCCC GGTAGAGAGA AAAGTCACTA AAGAAAAAGT CACCTTCCTA
ACCGATGATA CCGGCGTCAC TCTGGACTAC CATAATGGCC GTTCACAAAC ATCGACACAA
GAATCTTATA CCGTATTACG AGGTGACTTT GACCAATGGT TGATGGCCAA AGCCGAAGAG
GTTGGTGCCC AGTTTATTAC CGGTATTCGT GTCGATGAGC TGATTACTAA AGATGGCAAA
GTCGTAGGTG TTAATGCAGA CGGTGATGAG TTGATAGCTA AGGCTGTCAT TTTGGCCGAA
GGTGTTAACC CTGTGCTTGG TGAAAAATTA GGCATGGTAA AACCTAAAGT AAACGCCGAT
GCCATGGCTG TGGGTGCTAA AGAGCTGATT GAACTTCCCA AAGAGGTCAT TCAGGACAGA
TTTAATCTCT CAGATGATGA AGGCGCAGCC TGGTTGTTCG CCGGCTCGCC ATCAAATGGT
TTGATGGGTG GTGGTTTCAT CTATACCAAC CAAACTACAG TCTCATTGGG TATCGTCTGC
GGACTGCATG ATATAGGCAG CTCAGATAAA ACCGTTCCAC AAATGCTTGA AGACTTCAAA
AATCACTCAA TCATTAAGCC TCTGCTTGAA GGCGGGAAAC TACTCGAGTA TTCGGGTCAT
GTAGTACCGG AAGCTGGCTT AAATATGGTC CCTAAACTGG TTGATGATGG CGTATTGATA
ACCGGAGATG CGGCGGGTTT CTGCTTAAAC ATCGGCTACA CCGTTCGCGG AATGGATCTT
GCCATTGCTT CTGGCGAAGC GGCAGCGAAA GCCGTATTAA CGGCGCGTGC AAACAAGGAT
TTCAGTGCAC AAGGTTTGTC TTCATATCAG ACTCTTTTGG AAGACAGCTT TGTAATGAAA
GATCTGAAAC TCTATAAGAA CCTTCCAGCT TTCATGGAGA CTCCACGGAT CTTCAACGAA
TATCCAAAGA TGGTTGCCGA CATAATGCAA AGCATGTTCA CAGTAGATGG CAGCGAATCG
CAACCACTTC GGAAGACCCT CATGAAACAC TGTAAAGAAG TGGGTTACAT GAACCTGATT
AAAGATGGCA TTAAAGGAGT GACTGCAATA TGA
 
Protein sequence
MEEEAFDAII VGAGLAGCVA AYVLAKEGAD VLVIERGNYA GSKNMTGGRL YAHSLEKIIP 
GFAKEAPVER KVTKEKVTFL TDDTGVTLDY HNGRSQTSTQ ESYTVLRGDF DQWLMAKAEE
VGAQFITGIR VDELITKDGK VVGVNADGDE LIAKAVILAE GVNPVLGEKL GMVKPKVNAD
AMAVGAKELI ELPKEVIQDR FNLSDDEGAA WLFAGSPSNG LMGGGFIYTN QTTVSLGIVC
GLHDIGSSDK TVPQMLEDFK NHSIIKPLLE GGKLLEYSGH VVPEAGLNMV PKLVDDGVLI
TGDAAGFCLN IGYTVRGMDL AIASGEAAAK AVLTARANKD FSAQGLSSYQ TLLEDSFVMK
DLKLYKNLPA FMETPRIFNE YPKMVADIMQ SMFTVDGSES QPLRKTLMKH CKEVGYMNLI
KDGIKGVTAI