Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3232 |
Symbol | |
ID | 5611632 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 3924625 |
End bp | 3925917 |
Gene Length | 1293 bp |
Protein Length | 430 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640934170 |
Product | FAD dependent oxidoreductase |
Protein accession | YP_001474964 |
Protein GI | 157376364 |
COG category | [C] Energy production and conversion |
COG ID | [COG0644] Dehydrogenases (flavoproteins) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAGAAG AAGCATTTGA CGCGATTATC GTAGGAGCCG GGCTTGCTGG ATGCGTTGCC GCTTATGTTT TAGCAAAAGA GGGAGCGGAC GTTCTCGTTA TTGAGCGCGG TAACTATGCC GGCAGCAAAA ACATGACCGG TGGCCGACTC TATGCTCATA GTCTGGAGAA GATTATTCCC GGCTTTGCTA AAGAAGCCCC GGTAGAGAGA AAAGTCACTA AAGAAAAAGT CACCTTCCTA ACCGATGATA CCGGCGTCAC TCTGGACTAC CATAATGGCC GTTCACAAAC ATCGACACAA GAATCTTATA CCGTATTACG AGGTGACTTT GACCAATGGT TGATGGCCAA AGCCGAAGAG GTTGGTGCCC AGTTTATTAC CGGTATTCGT GTCGATGAGC TGATTACTAA AGATGGCAAA GTCGTAGGTG TTAATGCAGA CGGTGATGAG TTGATAGCTA AGGCTGTCAT TTTGGCCGAA GGTGTTAACC CTGTGCTTGG TGAAAAATTA GGCATGGTAA AACCTAAAGT AAACGCCGAT GCCATGGCTG TGGGTGCTAA AGAGCTGATT GAACTTCCCA AAGAGGTCAT TCAGGACAGA TTTAATCTCT CAGATGATGA AGGCGCAGCC TGGTTGTTCG CCGGCTCGCC ATCAAATGGT TTGATGGGTG GTGGTTTCAT CTATACCAAC CAAACTACAG TCTCATTGGG TATCGTCTGC GGACTGCATG ATATAGGCAG CTCAGATAAA ACCGTTCCAC AAATGCTTGA AGACTTCAAA AATCACTCAA TCATTAAGCC TCTGCTTGAA GGCGGGAAAC TACTCGAGTA TTCGGGTCAT GTAGTACCGG AAGCTGGCTT AAATATGGTC CCTAAACTGG TTGATGATGG CGTATTGATA ACCGGAGATG CGGCGGGTTT CTGCTTAAAC ATCGGCTACA CCGTTCGCGG AATGGATCTT GCCATTGCTT CTGGCGAAGC GGCAGCGAAA GCCGTATTAA CGGCGCGTGC AAACAAGGAT TTCAGTGCAC AAGGTTTGTC TTCATATCAG ACTCTTTTGG AAGACAGCTT TGTAATGAAA GATCTGAAAC TCTATAAGAA CCTTCCAGCT TTCATGGAGA CTCCACGGAT CTTCAACGAA TATCCAAAGA TGGTTGCCGA CATAATGCAA AGCATGTTCA CAGTAGATGG CAGCGAATCG CAACCACTTC GGAAGACCCT CATGAAACAC TGTAAAGAAG TGGGTTACAT GAACCTGATT AAAGATGGCA TTAAAGGAGT GACTGCAATA TGA
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Protein sequence | MEEEAFDAII VGAGLAGCVA AYVLAKEGAD VLVIERGNYA GSKNMTGGRL YAHSLEKIIP GFAKEAPVER KVTKEKVTFL TDDTGVTLDY HNGRSQTSTQ ESYTVLRGDF DQWLMAKAEE VGAQFITGIR VDELITKDGK VVGVNADGDE LIAKAVILAE GVNPVLGEKL GMVKPKVNAD AMAVGAKELI ELPKEVIQDR FNLSDDEGAA WLFAGSPSNG LMGGGFIYTN QTTVSLGIVC GLHDIGSSDK TVPQMLEDFK NHSIIKPLLE GGKLLEYSGH VVPEAGLNMV PKLVDDGVLI TGDAAGFCLN IGYTVRGMDL AIASGEAAAK AVLTARANKD FSAQGLSSYQ TLLEDSFVMK DLKLYKNLPA FMETPRIFNE YPKMVADIMQ SMFTVDGSES QPLRKTLMKH CKEVGYMNLI KDGIKGVTAI
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