Gene Ssed_3228 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3228 
Symbol 
ID5613764 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3918953 
End bp3920089 
Gene Length1137 bp 
Protein Length378 aa 
Translation table11 
GC content47% 
IMG OID640934166 
Productcrotonobetainyl-CoA dehydrogenase 
Protein accessionYP_001474960 
Protein GI157376360 
COG category[I] Lipid transport and metabolism 
COG ID[COG1960] Acyl-CoA dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATTTTA AATTAAGCGA CGAGCAAGAG TTATTCGTTT CTGGTATTCG CGATTTGATG 
GCGAAGGAGA ACTGGGAAAA CTATTTTGCA GAGTGTGATG AAAATAGTCA GTACCCGGAG
AGATTCGTCA AAGAGCTAGC CGAGATGGGA ATTGATAGCC TTTTGCTTCC TGAAGAGCAC
GGTGGATTCG ACGCCGGAAT GGTTACCCTT GCCGTTATCT GGGAAGAGCT TGGCCGTTTA
GGTGCACCGA CTTATGTCTT GTATCAGTTA CCTGGCATCA CAACGATTCT GAAACACGGT
AACCAAGACC AAATCCAAAA GATCATGGAA CTACGTGGTA CCGGTAAGCA GATGTGGAAC
TCGGCTATCA CTGAGCCAAG CGCAGGTTCT GACGTGGGTA GCTTGCTAAC CACTTATAAG
AGAAAGAACG GCAAAGTTTA TCTTACCGGT AGCAAGTGCT TTATCACCAG TGCGGCGGGT
ACGCCTTACA TCGTGGTTAT GGCTAAAGAT GCAGATTCAG AGAAGCCAAT CTTTACCGAG
TGGTTTGTGG ATATGTCAAA GCCGGGTATC AAGTTAGGCA AGTTACCTAA GCTTGGTTTG
AAGATGGACA GCTGCTGCGA GCTTCAGTTC GATGAACTTG AGCTGGAAGA GTCGGACATG
TTTGGTGAAG AGGGCAATGG CTTCTTACGT GTTAAGGAGG AGTTTGACTC AGAACGTTTC
CTTGTTGCAC TGACCAACTA TGGCGCTGCT TACTGCGCAT TCGAAGATGC GGCTAAGTAT
GCTAACCAGA GGGTTCAATT CGGTGAGGCT ATCGGTCGCT ACCAGCTTAT CCAGGATAAG
TTTGCTCATA TGGCTATCAA GCTTAACAGC ATGAAAAACA TGGTTTATGA AGCAGCCTGG
AAGTGTGACC AAGGCACGAT GACATCTGGT GACTCTGCAA TGTGCAAATA CTTTTGTGCG
AATGCCGGTT TCGAAGTTAT CGATTCTGCG ATGCAGGTTC TGGGTGGCTA TGCTATCGCT
GGCGAACATC GTATCAGCCG TATGTGGCGT GACATTCGCG TCGACAGAGT GTCAGGCGGT
TCAGATGAGA TGCAAATTCT GACCCTTGGT CGTTCTGTAC TTAAGCAATA CAGATAA
 
Protein sequence
MDFKLSDEQE LFVSGIRDLM AKENWENYFA ECDENSQYPE RFVKELAEMG IDSLLLPEEH 
GGFDAGMVTL AVIWEELGRL GAPTYVLYQL PGITTILKHG NQDQIQKIME LRGTGKQMWN
SAITEPSAGS DVGSLLTTYK RKNGKVYLTG SKCFITSAAG TPYIVVMAKD ADSEKPIFTE
WFVDMSKPGI KLGKLPKLGL KMDSCCELQF DELELEESDM FGEEGNGFLR VKEEFDSERF
LVALTNYGAA YCAFEDAAKY ANQRVQFGEA IGRYQLIQDK FAHMAIKLNS MKNMVYEAAW
KCDQGTMTSG DSAMCKYFCA NAGFEVIDSA MQVLGGYAIA GEHRISRMWR DIRVDRVSGG
SDEMQILTLG RSVLKQYR