| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3217 |
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| Symbol | |
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| ID | 5613432 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3900856 |
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| End bp | 3903711 |
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| Gene Length | 2856 bp |
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| Protein Length | 951 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640934155 |
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| Product | signal transduction protein |
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| Protein accession | YP_001474949 |
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| Protein GI | 157376349 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00711667 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATATTT TCAAACTCAT TACACCTATA TCGTACTGGG TATTAGCTAC TTTATGGGTG
GTTATTATCG GTGTTTATCT GCTAAAACTC AGACAGTTAA GGGCTGAAGG GGCTGTAAGC
AGAACGGTTA CGGTTCTCCT TATCATCCTT GCCATTGATG CCTTCAGGAC CATCGTTGAA
AGTGTCTATT TCGGATTGTA TTTCAACTCG CTGTACGGAC TGATACCTAA GAGTATTGCC
GATCTGCTAT CACAACCCGC TTTGCTCATT ATTCCGAAGC TAATCAACAT TTTTGCTGGC
GTTCTAGTCA TCTTGCTTCT CATCAAGCGC TGGGTACCAA GAGATATTCA TGAGCGCAAA
GAAGCATTGC TCGCTCTTCA CGCAGCAAAA AGCGCATCAG TCAATAACGA AAATTTGTTT
AATTCTATTT TTAATGGCGT TACCGATGCT TGCATCTTTG CCGATTCGAA TCGCAATATT
GTTTCGATAA ATCAAGGTTT TGAGCTCATG ATGGGTTATG GCATTGATGA GCTCGAGGGG
AAAACAGCAT CAATCATTTA TGAGAGTGAT GAAGAGTACG AACGACAAGG TCGAATTCAT
TTCAATCTGG CAGCGAAAGA GAAAGTCACG CCTTATGAAG CGAACTATCG GCACAAGGAC
GGCAGTATCA TTGTAGGTGA AACCAGTAGG ATTGTTATTA GAACTCTTGA TGATCAAATT
TTGGGTTACG TTGGGTTTAT CCGGGATGTC ACAGACCGCA AAAAAGCTAC GACAGCATTA
CAGGAAAGTA CGGCGATGCT ATCCCATCAT GTACAGAATA CCCCGCTTGG GTGCATCTCA
TGGGATAGCA ATTTAAATTG TATCGAGTGG AACAAATCAG CCGAGAAGAT ATTCGGATAC
TCCCCTGACG AAGTTATTGG TCATGCTCTA TTAGAGATAT TGGTGTCTGA AGAAATTAGA
GATGATATCA ATAATATCGG TAAGATATTG TTTAAAGGTA ATAAATGCAC CAGAAGTTCA
AATGAAAACA TTACAAAAGA TGGCAGGACC ATCATTTGTG AATGGTATAG CACCCCGATC
GTGGGGGTGA ATGGTGAAGT CATCGGTGTG ACATCACTGA TTCTAGACAT TACCGAGAGC
AAGCAAGCGG AGCTAAAGCT AAAACATGCC GCCAGTGTAT TTACCCACAC AAACCAAGGC
ATCACAATCA CGGACACCTC AGGAGTCATC ATCGAAGTTA ATGATGCTTT TAGCGCTATT
ACAGGCTACG CACGCGATGA GGTGATAGGG CAAAACCCAC GGGTCCTTCA ATCCGGACGA
CATTCACCTG AGTTCTATAG AGAGATGTGG GCCACTCTGC AAGCGGATGG GCATTGGACA
GGTGAGATTT GGAACAAGCG TAAGAATGAC GAGATCTATC CAGAGATGCT TACTATCAGC
GCGGTGCTCG ATGCTACCGG CAAGGTGCAA AACTACGTCG CCCTATTCAA CGACATCACA
GCGATTAAAG AGCATCAGGA ACAGCTGGAA CGCATTGCAC ATTATGATAC GTTAACCAAC
CTGCCAAACC GCACACTATT GGCTGATCGT CTAACGCAAT CCATGGTGCA AGTCCGGCGA
CGGAAGTCAT CCTTAGCGGT CGTTTTTCTT GATTTAGATA AATTCAAAGA TGTGAATGAC
GCTTACGGTC ACGACGTCGG TGATAAATTG TTAATTGTTA TCTCACGTCG CCTGAAGGAG
GCTTTACGCG ATATCGATAC GCTGGCACGA ATAGGTGGTG ATGAGTTTGT CGCCGTGCTG
ATGGATATCG AAAAGGGTGA GGATTGTGAA CCTGTATTGG AAAGGCTGTT AGAGGCTGCC
TCTGGCTCAG TGACTGTGGA GGGGATTATG CTGAAAGTCT CTGCCAGTAT GGGGGTCGCC
ATTTACCCAC AAGATGGCAT AGATGCAGAC CAACTCCTGC GTCATGCAGA CCAAGCCATG
TATGTAGCAA AGCATGAGGG TAAGAACTGC TATCACTTGT TTGACACTGC ACAAAATATT
GCGATGCAGA TTCGACATGA TGATTTGCAG AGTATGCGCA AGGCTTTGGA TCAAAGTGAA
TTTGTGCTGT ATTACCAGCC CAAGGTCAAT ATGAGGACGG GAGCAATTAT TGGTGCTGAA
GCCTTAATTC GATGGCTCTC CCCTGAGCGT GGTTTAGTTG GACCTAACGA GTTTTTACCT
GCAATTGAGA ATCATGTTAT TAGCATTGAG GTAGGCGAGT GGGTCATTGA CACCGCACTG
GGTCAAATAG CGGCATGGCA AGAGCTAGGG TTGGATATTC CTGTCAGTGT CAACGTTAGC
GCTCTTCAAC TACAACATGA TGGCTTTGTA ACTTGCTTGG CAGCACTACT GGAAGCACAC
CCGGAGGTAG CTCCGAGCTC TTTGGAAATA GAAGTACTTG AAACGAGTTT GATAGACGAT
GTAATGCAGG TCTCGGCAAC CATGCTCGCC TGTATTGAAC TGGGAGTGAC CTTTGCTTTA
GATGACTTTG GTACGGGCTA CTCTTCACTG ACTTATCTAA GACGATTGCC GGCGAGTTTG
ATTAAGATAG ACCAAACCTT TGTGCTCGAT ATGTTGACGA CACCAGATGA TCTGGCGATT
GTTGAGGGGG TTGTGAGCTT GGCTAAATCA TTCAAACATA AGGTAATTGC TGAGGGGGTC
GAGACCATCG CGCATGGCAC TACACTATTA CAAACGGGCT GTGAATTAGC GCAAGGCTAT
GGCATTGCGA GACCCATGAT GGCTAAGGAC ATTCCTGAGT GGTCGGTTAA CTGGAAGCCA
GATGATGCAT GGCGAGAGTT TAGCCCTCAT GTGTGA
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| Protein sequence | MDIFKLITPI SYWVLATLWV VIIGVYLLKL RQLRAEGAVS RTVTVLLIIL AIDAFRTIVE
SVYFGLYFNS LYGLIPKSIA DLLSQPALLI IPKLINIFAG VLVILLLIKR WVPRDIHERK
EALLALHAAK SASVNNENLF NSIFNGVTDA CIFADSNRNI VSINQGFELM MGYGIDELEG
KTASIIYESD EEYERQGRIH FNLAAKEKVT PYEANYRHKD GSIIVGETSR IVIRTLDDQI
LGYVGFIRDV TDRKKATTAL QESTAMLSHH VQNTPLGCIS WDSNLNCIEW NKSAEKIFGY
SPDEVIGHAL LEILVSEEIR DDINNIGKIL FKGNKCTRSS NENITKDGRT IICEWYSTPI
VGVNGEVIGV TSLILDITES KQAELKLKHA ASVFTHTNQG ITITDTSGVI IEVNDAFSAI
TGYARDEVIG QNPRVLQSGR HSPEFYREMW ATLQADGHWT GEIWNKRKND EIYPEMLTIS
AVLDATGKVQ NYVALFNDIT AIKEHQEQLE RIAHYDTLTN LPNRTLLADR LTQSMVQVRR
RKSSLAVVFL DLDKFKDVND AYGHDVGDKL LIVISRRLKE ALRDIDTLAR IGGDEFVAVL
MDIEKGEDCE PVLERLLEAA SGSVTVEGIM LKVSASMGVA IYPQDGIDAD QLLRHADQAM
YVAKHEGKNC YHLFDTAQNI AMQIRHDDLQ SMRKALDQSE FVLYYQPKVN MRTGAIIGAE
ALIRWLSPER GLVGPNEFLP AIENHVISIE VGEWVIDTAL GQIAAWQELG LDIPVSVNVS
ALQLQHDGFV TCLAALLEAH PEVAPSSLEI EVLETSLIDD VMQVSATMLA CIELGVTFAL
DDFGTGYSSL TYLRRLPASL IKIDQTFVLD MLTTPDDLAI VEGVVSLAKS FKHKVIAEGV
ETIAHGTTLL QTGCELAQGY GIARPMMAKD IPEWSVNWKP DDAWREFSPH V
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