Gene Ssed_3217 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3217 
Symbol 
ID5613432 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3900856 
End bp3903711 
Gene Length2856 bp 
Protein Length951 aa 
Translation table11 
GC content45% 
IMG OID640934155 
Productsignal transduction protein 
Protein accessionYP_001474949 
Protein GI157376349 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00711667 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATATTT TCAAACTCAT TACACCTATA TCGTACTGGG TATTAGCTAC TTTATGGGTG 
GTTATTATCG GTGTTTATCT GCTAAAACTC AGACAGTTAA GGGCTGAAGG GGCTGTAAGC
AGAACGGTTA CGGTTCTCCT TATCATCCTT GCCATTGATG CCTTCAGGAC CATCGTTGAA
AGTGTCTATT TCGGATTGTA TTTCAACTCG CTGTACGGAC TGATACCTAA GAGTATTGCC
GATCTGCTAT CACAACCCGC TTTGCTCATT ATTCCGAAGC TAATCAACAT TTTTGCTGGC
GTTCTAGTCA TCTTGCTTCT CATCAAGCGC TGGGTACCAA GAGATATTCA TGAGCGCAAA
GAAGCATTGC TCGCTCTTCA CGCAGCAAAA AGCGCATCAG TCAATAACGA AAATTTGTTT
AATTCTATTT TTAATGGCGT TACCGATGCT TGCATCTTTG CCGATTCGAA TCGCAATATT
GTTTCGATAA ATCAAGGTTT TGAGCTCATG ATGGGTTATG GCATTGATGA GCTCGAGGGG
AAAACAGCAT CAATCATTTA TGAGAGTGAT GAAGAGTACG AACGACAAGG TCGAATTCAT
TTCAATCTGG CAGCGAAAGA GAAAGTCACG CCTTATGAAG CGAACTATCG GCACAAGGAC
GGCAGTATCA TTGTAGGTGA AACCAGTAGG ATTGTTATTA GAACTCTTGA TGATCAAATT
TTGGGTTACG TTGGGTTTAT CCGGGATGTC ACAGACCGCA AAAAAGCTAC GACAGCATTA
CAGGAAAGTA CGGCGATGCT ATCCCATCAT GTACAGAATA CCCCGCTTGG GTGCATCTCA
TGGGATAGCA ATTTAAATTG TATCGAGTGG AACAAATCAG CCGAGAAGAT ATTCGGATAC
TCCCCTGACG AAGTTATTGG TCATGCTCTA TTAGAGATAT TGGTGTCTGA AGAAATTAGA
GATGATATCA ATAATATCGG TAAGATATTG TTTAAAGGTA ATAAATGCAC CAGAAGTTCA
AATGAAAACA TTACAAAAGA TGGCAGGACC ATCATTTGTG AATGGTATAG CACCCCGATC
GTGGGGGTGA ATGGTGAAGT CATCGGTGTG ACATCACTGA TTCTAGACAT TACCGAGAGC
AAGCAAGCGG AGCTAAAGCT AAAACATGCC GCCAGTGTAT TTACCCACAC AAACCAAGGC
ATCACAATCA CGGACACCTC AGGAGTCATC ATCGAAGTTA ATGATGCTTT TAGCGCTATT
ACAGGCTACG CACGCGATGA GGTGATAGGG CAAAACCCAC GGGTCCTTCA ATCCGGACGA
CATTCACCTG AGTTCTATAG AGAGATGTGG GCCACTCTGC AAGCGGATGG GCATTGGACA
GGTGAGATTT GGAACAAGCG TAAGAATGAC GAGATCTATC CAGAGATGCT TACTATCAGC
GCGGTGCTCG ATGCTACCGG CAAGGTGCAA AACTACGTCG CCCTATTCAA CGACATCACA
GCGATTAAAG AGCATCAGGA ACAGCTGGAA CGCATTGCAC ATTATGATAC GTTAACCAAC
CTGCCAAACC GCACACTATT GGCTGATCGT CTAACGCAAT CCATGGTGCA AGTCCGGCGA
CGGAAGTCAT CCTTAGCGGT CGTTTTTCTT GATTTAGATA AATTCAAAGA TGTGAATGAC
GCTTACGGTC ACGACGTCGG TGATAAATTG TTAATTGTTA TCTCACGTCG CCTGAAGGAG
GCTTTACGCG ATATCGATAC GCTGGCACGA ATAGGTGGTG ATGAGTTTGT CGCCGTGCTG
ATGGATATCG AAAAGGGTGA GGATTGTGAA CCTGTATTGG AAAGGCTGTT AGAGGCTGCC
TCTGGCTCAG TGACTGTGGA GGGGATTATG CTGAAAGTCT CTGCCAGTAT GGGGGTCGCC
ATTTACCCAC AAGATGGCAT AGATGCAGAC CAACTCCTGC GTCATGCAGA CCAAGCCATG
TATGTAGCAA AGCATGAGGG TAAGAACTGC TATCACTTGT TTGACACTGC ACAAAATATT
GCGATGCAGA TTCGACATGA TGATTTGCAG AGTATGCGCA AGGCTTTGGA TCAAAGTGAA
TTTGTGCTGT ATTACCAGCC CAAGGTCAAT ATGAGGACGG GAGCAATTAT TGGTGCTGAA
GCCTTAATTC GATGGCTCTC CCCTGAGCGT GGTTTAGTTG GACCTAACGA GTTTTTACCT
GCAATTGAGA ATCATGTTAT TAGCATTGAG GTAGGCGAGT GGGTCATTGA CACCGCACTG
GGTCAAATAG CGGCATGGCA AGAGCTAGGG TTGGATATTC CTGTCAGTGT CAACGTTAGC
GCTCTTCAAC TACAACATGA TGGCTTTGTA ACTTGCTTGG CAGCACTACT GGAAGCACAC
CCGGAGGTAG CTCCGAGCTC TTTGGAAATA GAAGTACTTG AAACGAGTTT GATAGACGAT
GTAATGCAGG TCTCGGCAAC CATGCTCGCC TGTATTGAAC TGGGAGTGAC CTTTGCTTTA
GATGACTTTG GTACGGGCTA CTCTTCACTG ACTTATCTAA GACGATTGCC GGCGAGTTTG
ATTAAGATAG ACCAAACCTT TGTGCTCGAT ATGTTGACGA CACCAGATGA TCTGGCGATT
GTTGAGGGGG TTGTGAGCTT GGCTAAATCA TTCAAACATA AGGTAATTGC TGAGGGGGTC
GAGACCATCG CGCATGGCAC TACACTATTA CAAACGGGCT GTGAATTAGC GCAAGGCTAT
GGCATTGCGA GACCCATGAT GGCTAAGGAC ATTCCTGAGT GGTCGGTTAA CTGGAAGCCA
GATGATGCAT GGCGAGAGTT TAGCCCTCAT GTGTGA
 
Protein sequence
MDIFKLITPI SYWVLATLWV VIIGVYLLKL RQLRAEGAVS RTVTVLLIIL AIDAFRTIVE 
SVYFGLYFNS LYGLIPKSIA DLLSQPALLI IPKLINIFAG VLVILLLIKR WVPRDIHERK
EALLALHAAK SASVNNENLF NSIFNGVTDA CIFADSNRNI VSINQGFELM MGYGIDELEG
KTASIIYESD EEYERQGRIH FNLAAKEKVT PYEANYRHKD GSIIVGETSR IVIRTLDDQI
LGYVGFIRDV TDRKKATTAL QESTAMLSHH VQNTPLGCIS WDSNLNCIEW NKSAEKIFGY
SPDEVIGHAL LEILVSEEIR DDINNIGKIL FKGNKCTRSS NENITKDGRT IICEWYSTPI
VGVNGEVIGV TSLILDITES KQAELKLKHA ASVFTHTNQG ITITDTSGVI IEVNDAFSAI
TGYARDEVIG QNPRVLQSGR HSPEFYREMW ATLQADGHWT GEIWNKRKND EIYPEMLTIS
AVLDATGKVQ NYVALFNDIT AIKEHQEQLE RIAHYDTLTN LPNRTLLADR LTQSMVQVRR
RKSSLAVVFL DLDKFKDVND AYGHDVGDKL LIVISRRLKE ALRDIDTLAR IGGDEFVAVL
MDIEKGEDCE PVLERLLEAA SGSVTVEGIM LKVSASMGVA IYPQDGIDAD QLLRHADQAM
YVAKHEGKNC YHLFDTAQNI AMQIRHDDLQ SMRKALDQSE FVLYYQPKVN MRTGAIIGAE
ALIRWLSPER GLVGPNEFLP AIENHVISIE VGEWVIDTAL GQIAAWQELG LDIPVSVNVS
ALQLQHDGFV TCLAALLEAH PEVAPSSLEI EVLETSLIDD VMQVSATMLA CIELGVTFAL
DDFGTGYSSL TYLRRLPASL IKIDQTFVLD MLTTPDDLAI VEGVVSLAKS FKHKVIAEGV
ETIAHGTTLL QTGCELAQGY GIARPMMAKD IPEWSVNWKP DDAWREFSPH V