| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3215 |
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| Symbol | |
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| ID | 5613430 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3898432 |
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| End bp | 3899322 |
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| Gene Length | 891 bp |
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| Protein Length | 296 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934153 |
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| Product | putative transcriptional regulator protein |
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| Protein accession | YP_001474947 |
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| Protein GI | 157376347 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGAATAG AAGATCTGAA ACTTTTTACT ATTGTCGTGA AACTTGGCAG TTTTACCGCT
GCGGCCACGG CTTTAGATCT GCCTAGGGCT AACGTCAGTC GACGGATTGG CGAGCTTGAA
AAGTCCCTTA ATGCACAGCT GTTTTTCAGA ACGACCCGCC AGCTGAGATT AACCCAGCAC
GGCGAAGCCT ATTATCATGA GCTGTTGACT GTGCTTGAGG GGTTTGAGCA AGCCAAAAAC
AAATTACATG ATATCGATGA TAAGCCTGTG GGCAAGGTTA AGGTGGGCTT TCTACCTGAG
AGCGATGAGG CACTGCAGCC TATATTGGCC CGTTTTCAGG AACAATATCC TGACATTGAA
CTCGATTTAC GCTTTACCAA TAACTATGTC ACCGATATTT ACAGTCAGGG GTTAGATTTT
GCTATTCACG GGGGCCGAAT TCTGGATTCG GGTTTTATCG CCAGACGATT ATTAAGTCTT
GGGCGTTGCA TGTATGCCAG CCCTGAATAT ATTGAAAAAA ACGGCATGCC GAAAACACTA
GATGAACTGA GAGAACATCA GTGTATTTGC TATCGCTGGC CGGACGGAAC CCTTGATGAT
TGTTGGGATC TGCTCACCGA AACGATAAAA GTATCAGGCC GATTCAGTAG TAACCATATG
GGATTTGTCC GGCGCGCTAT CATAGGCGGG CAGGGCATTG GTTTTTTGCC TCCGCTGTTT
GCATTTAATG CGATCGAATC GGAAGGGCTT GTGCGCATTC TGCCGCAATA CCAGTCTAAG
ACCGAAGATG TGTGGCTCAT CTATCCGGAT AGGAGAGGGA TAAGTCTCCC GACACGACTA
TTGATTGATT TTTTAGTAAA AGAAGTCCCT AAGCTCGCTA CTTTGTCATG A
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| Protein sequence | MRIEDLKLFT IVVKLGSFTA AATALDLPRA NVSRRIGELE KSLNAQLFFR TTRQLRLTQH
GEAYYHELLT VLEGFEQAKN KLHDIDDKPV GKVKVGFLPE SDEALQPILA RFQEQYPDIE
LDLRFTNNYV TDIYSQGLDF AIHGGRILDS GFIARRLLSL GRCMYASPEY IEKNGMPKTL
DELREHQCIC YRWPDGTLDD CWDLLTETIK VSGRFSSNHM GFVRRAIIGG QGIGFLPPLF
AFNAIESEGL VRILPQYQSK TEDVWLIYPD RRGISLPTRL LIDFLVKEVP KLATLS
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