| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3211 |
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| Symbol | |
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| ID | 5613318 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3890171 |
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| End bp | 3892357 |
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| Gene Length | 2187 bp |
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| Protein Length | 728 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640934149 |
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| Product | hypothetical protein |
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| Protein accession | YP_001474943 |
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| Protein GI | 157376343 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1944] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00702] uncharacterized domain
[TIGR03549] conserved hypothetical protein TIGR03549 |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.357431 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAATCA AAGTTAATTT TCTCGACAAT CTTAGACTGG AAGCGAAGTT TGACGATTTT
ACCGTCACCG CCGATCAGCC TATTCGTTAC AAAGGCGATG GCTCAGCACC CAGCCCTTTT
GATTATTTCT TAGCGTCATC AGCACTTTGT GCGGCCTACT TTATCAAGGT GTACTGTAAG
GCGCGTGATA TTCCAACGGA AAACATCAGA CTGTCACAAA ACAACATTGT TGACCCGGAA
GATCGTTATA ACCAGATTTT CCAAATTCAG GTAGAACTGC CTGATGATAT TTCAGAGAAA
GATAGAGTCG GTATTTTACG TTCGATAGAG CGTTGTACCG TTAAAAAGGT GGTACAGACA
GGCCCTGAAT TTAAGATTGA AACGGTTGAA AACCTCGAAT CAGATGCCAA TGCGATGTTG
ATGGGGCAAC CCGATGGCGA TGTCAGTACC TACATCTTGG GTAAAGATCT GCCGCTTGAG
CAAACCATCT CTAACATGAC GGGCATGTTA GCCGATCTGG GAATGAAGAT AGAGATATCT
TCGTGGCGCA ACATTGTCCC TAATGTGTGG TCGTTACATA TTCGCGATGC GGCATCACCT
TCGTGTTTTA CTAATGGTAA AGGTGCCACT AAAGAAAGTG CGCTTTGCTC GGCACTCGGT
GAGTTTATCG AACGCTTAAA CTGCAACTTT TTCTATAACG ATCAATTTTT CGGTGAAGAG
ATTGCCAACA GTGAATTTGT TCATTACCCC AATGAAAAGT GGTTTGAGCT AGAAGACGAC
GATGCATTGC CGGCGGGGAT CTTAGATGAG CATTGTTTAG ACATTTACAA CCCAGATGGT
GAACTGGCGG GTTCTAATCT TATCGATACC AACTCAGGCA TGGTCGAACG TGGCATCTGT
ACCATTCCCT ATGTTCGCCA TAGCGATGGT GAAACGGTAC ATTTTCCGTC TAACTTAATC
GAAAACCTGT TCCTGAGTAA CGGCATGAGT GCGGGTAACA ACCTGCAAGA AGCCAAGGTG
CAGTGTTTAT CAGAAATTTT TGAGCGCGCC GTTAAAAGAC AAATTATTGA ACAAGAAATT
GTCTTGCCTG ATGTACCGAT GCAAGTGTTA GAGAAGTACC CGAGTATCCT GGCCGGTATT
CAAGGCCTGG AAGCACAGGG TTTCCCAGTT GTCGTTAAAG ACGCCTCGCT TGGTGGTCAA
TTCCCGGTTA TGTGTGTCAC GCTGATGAAC CCAAGAACGG GTGGGGTATT TGCCTCTTTT
GGTGCGCACC CAAGCTTTGA AGTGGCGTTA GAGCGAAGCT TGACTGAGCT ATTGCAGGGT
CGCAGCTTTG AAGGCTTAAA CGACGTGCCT AAACCTACTT TCGACAGCAT GACGGTGACT
GAGCCTGAAA ACTTTGTCGA GCACTTTATC GATTCTACCG GTGTTATCTC TTGGCGCTTC
TTCAGTAGCA ATCATGACTA TGATTTTTGC GAATGGGATT TCTCCGGCAC TAACGCAGAA
GAGTCTGAAA GCTTATTTGG CATATTAGCC GATATTGGCA AAGAGGCTTA TATTGCCGAA
TTTGATCAGC TCGGTGCCTC GGTGTGCCGT ATTTTGGTAC CTGATTACTC TGAAGTGTAT
CCGGTTGAAG ATCTGATTTG GGATAACACC AATAAATCGC TCGATTATCG TGAAGATATC
TTAAATCTTC ATTCACTCAA TGATGATGAG TTAGCTGGTT TGGTCGAGCG TCTAGAAGAG
AGTCAATTAG ATAACCAAAC TGACATTCCA ACATTGATTG GTATTGTATT TGATGAAAAT
ACCCCATGGG GTCAGTTGAC GATTATTGAG CTTAAGATAC TTATCTATCT TGCATCGGGC
GAGCTTGAAA ATGCCATTGA GCTTGTGGGT GAGTTCCTGC AGTACAATGA CAATACAGTT
GAACGTGGTT TGTTCTATCA GGCAGTCAAT GCGGTGTTAG AAGTCACCTT AGATGAAGAG
TTAGAACTTG AGCACTTTAT TCATAATTTC GAAAGAATGT TTGGTAAAGA GACCATGGAT
AACGTGGTTG GCTCAGTGAC CGGTGAGGTG AAGTTCTTCG GGCTGACTCA AACCAGCATG
AAGCTTGAGG GCATAGAGCC ACACCTGAGA CTTATTGAAA GTTACAAGAA ATTGCATCAA
GCTCGTAAAG CCAAAGCGGT GAGTTAA
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| Protein sequence | MEIKVNFLDN LRLEAKFDDF TVTADQPIRY KGDGSAPSPF DYFLASSALC AAYFIKVYCK
ARDIPTENIR LSQNNIVDPE DRYNQIFQIQ VELPDDISEK DRVGILRSIE RCTVKKVVQT
GPEFKIETVE NLESDANAML MGQPDGDVST YILGKDLPLE QTISNMTGML ADLGMKIEIS
SWRNIVPNVW SLHIRDAASP SCFTNGKGAT KESALCSALG EFIERLNCNF FYNDQFFGEE
IANSEFVHYP NEKWFELEDD DALPAGILDE HCLDIYNPDG ELAGSNLIDT NSGMVERGIC
TIPYVRHSDG ETVHFPSNLI ENLFLSNGMS AGNNLQEAKV QCLSEIFERA VKRQIIEQEI
VLPDVPMQVL EKYPSILAGI QGLEAQGFPV VVKDASLGGQ FPVMCVTLMN PRTGGVFASF
GAHPSFEVAL ERSLTELLQG RSFEGLNDVP KPTFDSMTVT EPENFVEHFI DSTGVISWRF
FSSNHDYDFC EWDFSGTNAE ESESLFGILA DIGKEAYIAE FDQLGASVCR ILVPDYSEVY
PVEDLIWDNT NKSLDYREDI LNLHSLNDDE LAGLVERLEE SQLDNQTDIP TLIGIVFDEN
TPWGQLTIIE LKILIYLASG ELENAIELVG EFLQYNDNTV ERGLFYQAVN AVLEVTLDEE
LELEHFIHNF ERMFGKETMD NVVGSVTGEV KFFGLTQTSM KLEGIEPHLR LIESYKKLHQ
ARKAKAVS
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