| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3204 |
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| Symbol | |
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| ID | 5612735 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3876028 |
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| End bp | 3881841 |
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| Gene Length | 5814 bp |
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| Protein Length | 1937 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640934142 |
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| Product | omega-3 polyunsaturated fatty acid synthase PfaC |
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| Protein accession | YP_001474936 |
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| Protein GI | 157376336 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3321] Polyketide synthase modules and related proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.47814 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTTCTT CAGACAAACA GGCCGCTAAG CAGAGCAAAA TTGCTATAGT CGGTCTTGCT
ACGCTCTACC CTGATGCTAA GGCTCCCGGT GAGTTTTGGC AGAACGTGCT CGATAAACGA
GATTCACGTA CCACCTTAAC CAATGAAAAA CTCGGTGCAA ACAGCGCAGA TTACCAAGGT
GTTCAGGGGC AATCAGACCG CTTTTACTGT GATAAAGGCG GCTATATTGA GAACTTCAGC
TTCGATGCTA GCGGCTATCA ACTGCCAACT GAGAGCTTAA CCGGATTAGA TGACAGCTTC
CTATGGGCGC TAGACACCAG CCGTAAAGCT CTGATTGATG CGGGAATTAC CTTAGGTAGT
TCATCGCTTG AGCGTACGGG TATCATCATG GGTGCCCTAT CGTTCCCAAC GACTCGTTCG
AACGATCTGT TTCTGCCTAT CTACCACAGT GCTGTTGAAA AAGCCCTGCA AGATAAGCTG
GGAAGTCGCG CTTTCAAGCT AAATCCAACC AATGCCCATA CCGTGCGCAG TCAAAGCGAA
ACGGCTTTAG ATAACGCAAA TGGTGCTATT GCCCACAACG CCTCAAAGAT AGTTGCTGAC
GCATTAGGCC TAGGCGGTGC ACAACTGAGT TTAGATGCAG CCTGTGCAAG CTCAGTCTAC
TCGCTAAAAC TTGCCTGTGA TTACCTGAGT GCAGGCAAAG CCGACGTGAT GCTAGCGGGC
GCGGTCTCTG GTGCCGATCC TTTCTTTATC AACATGGGTT TCTCCATCTT CCACGCTTAC
CCCGATCATG GTGTATCGGT ACCATTTGAT AGCGACAGTA AAGGTCTGTT CGCCGGTGAA
GGTGCGGGTG TATTAGTGCT AAAGCGTCTT GAAGATGCCG AGCGCGATAA TGATAAGATC
TACGCCGTTG TCAGTGGTGT AGGCCTATCT AACGATGGTA AGGGGCAGTT TGTGCTTAGC
CCTAATCCAA AGGGTCAGGT AAAAGCGTTC GAACGTGCTT ATGCCGCCAG TGATATCGAG
CCTAAAGATG TCGAAGTGAT TGAGTGTCAC GCAACGGGTA CGCCGCTGGG TGACAAGATT
GAACTCACCT CGATGGAGAC CTTCTTCGAA GATAAGTTAG CAGGTAGCAA AGCGCCGTTG
ATCGGCTCAG CTAAGTCTAA CTTAGGCCAT CTGCTGACCG CCGCTGGCAT GCCGGGGATC
ATGAAGATGA TCTTCGCCAT GAAAGAGGGA GCACTGCCGC CAAGTATTAA TATTAGCGAT
GCAATATCTT CGCCCAACAA CCTATTTGGC ACAGGAACGT TACCTAACCA GGTACAACCT
TGGCCAGCAA AAGCGGGTAA CGATAAGCAC CATGCTGGTG TGTCGGTCTT TGGCTTTGGC
GGGTGTAACG CACACCTTCT ATTAGAGTCA TACTCGACTC AACAAGCCCC TAGCCAACAA
ACCGCGAGCA CGCAGCCGCT GCAAGCAGTT AAGCCTGATG CGATGAAGAT AAGCGGTCTT
GCCTCTCACT TTGGTCCTCT TAATAGCATC AACCAGCTAA ATGATGCTAT TACATCAAAC
ACAGATGGCT TTATCTCGCT ACCTAAGAAA CGCTGGAAAG GGTTAGAGAA ACATCAAGAG
TTGCTAGCTG AATTTGGCCT TGCAGCTGCG CCCAAGGGTG CCTATGTCGA CAGTTTCGAC
TTAGACTTCC TGCGCTTCAA GCTGCCGCCC AATGAAGATG ATCGCCTTAT CTCACAGCAG
CTAATGCTGA TGAAGGTCAC CGATGAAGCA ATTCGTGACG CCAAGTTAAA GCCAGGGCAA
AAAGTTGCAG TACTGGTTGC TATGGAAACT GAGCTTGAAC TTCACCAGTT CCGCGGCCGT
GTTAACCTGC ACACTCAACT TGAGCAGAGC CTATCGGCAC TAGGCGTCAC CTTAACGGGT
GATGAGTACC AAGCATTAGA AGCTATCACA ATGGATAGCG TTCTCGATGC GGCTAAGCTC
AACCAGTACA CCAGCTTTAT CGGCAACATC ATGGCCTCTC GAATCGCCTC ACTATGGGAT
TTCAATGGTC CGGCATTTAC CATCTCTGCC GCCGAGCAGT CGGTAAGCCG CTGTATCGAT
GTCGCGCAGA ATATGATGAC CAGCGAAGCC CTGGATGCTG TGGTTATCGC AGCAGTTGAT
CTCTCTGGAA GTTTTGAGCA GGTGATACTG AAAAACAGTG TCGAGCCCGT ATCTATCGAT
GCGAGTGCTG CCCAAAACAG TGGCAGCTGG AATGTCGGTG AAGGAGCTGG AGCTGTTGTA
CTTGTACCTG ATGACGCTAA CTCAGCGAAA TCATACGGCA GCCTTGATGC ACTAGCCTTT
GGCAGAGTGA CAGAAGTAAA TCTAGTTGCT GATAACTTGC TGACCCAAGC AGGTGTCGAT
ATCAACACCG TTAAGGTCGT TGAAACGAGT ATCGCCCCTG GCAGTATCTC TTCTGAGCCT
GTAAGTAAGC TATTCCCAAA TGCTATTAGC ACCAGTGCAG ATAGCCGTGT GGGTCACAGC
TTTGCTGCTG CTGGAATGGC TGGCTTACTT CATGGCCTGC TTAGTCTATC AATTCAGAAT
CAGTCTCAGC AAAAAGCAGG CGCTGCAATC GTTGCTAATA GCAGTGAAAA TCAAGTCTCG
CAGCTATTAA TCAGCCAAAG CCCAACTGAA AACAGCGCGC TTAGTGCTCG TTTAAGCAGT
GAGCTTAAAT CAGATGCTAA GCACCAGCTA CTGAAGCAGG TCACCTTAGG TGGTCGTGAT
ATCTATCAAC ATATCGTCGA TACACCACTT GCAAGCCTAG CCGCTATTCA GGGCAAACTT
GCTCAAGGCA GCGCTTCAAC AGTTGTGAAG CAGCAGAAGC CACTAATAAT GCGCCCAGCT
CAAACTAAAG AGCAAAAACA AGCGCAAGCA ATACCTGTTA GCCCTACTCC AGTATTAGGT
ACACCTATGA AAAACAAGAC AATAGACGTT TCAGCAGGCG ATATGGCTGC ATTTGCACAA
AACCAGCAGC TGACTCAAGA GGCTCATCAG GCATTCCTGA AGAGCCGTTC AGCCGGTATG
AAAGTGGCCG ACGCTCTGCT TAAGCAGCAG CTAGCACAAG TGACAGGACA AGAGCCGGTA
ACTAGCACAG CGATCCCTGC GCCTGTTTCA TATGAAAATA CATTGAGCAC ACAACCAGCG
CCTGCCGCGG TTCTTGGCTC TTTACCCCAA GGGAAGGAGC TGAAGCCAGA TCACGCTAAC
GTACCACCAT ACATTGCGCC AACGCCTGAG CTTAAGCCAT GTATCTGGAA CTATGCCGAT
CTTGTTGAGT ACGCTGAGGG TGATATCGCT AACGTATTCG GTTCGGATTA CGCCATTATC
GACAGCTACT CACGTCGCGT ACGTCTACCG ACCACAGATT ACCTGTTGGT ATCGCGCGTC
ACTAAACTCG ATGCCACCAT GAACGAGTTC AAACCTTGTT CTATGACCAC AGAATATGAT
ATTCCGCTAG ATGCGCCTTA CCTGGTTGAT GGCCAGATCC CATGGGCAGT AGCGGTTGAA
TCGGGTCAGT GTGACTTGAT GCTCATTAGC TACCTTGGTA TCGATTTTGA GAACAAGGGC
GACCGCGTTT ACCGTCTGCT TGATTGTACG CTTACTTTCC TGGGCGATCT GCCACGTGGC
GGCGATACCC TGAGATACGA TATTAAGATC AACAACTACG CCCGTAACGG CGAGACCCTA
TTGTTCTTCT TCTCTTACGA GTGTTTCGTT GGCGATACCA TGATCCTTAA GATGGATGGT
GGTTGTGCAG GCTTCTTCAC CGATGAAGAG CTTGCCGACG GTAAAGGGGT TATCCGCACC
GAAGATGAGA TTAAAGCACG TAACTTAGTG GTGAAGAAGA CCTTCAACCC GCTATTAGAT
TGCCCTAAAT CCAGCTTCAG CTACGGCGAT ATCCATAAGC TATTGACTGC CGATATCGAA
GGCTGTTTTG GCGCCACTCA CGCAGGCCCT GCACAACCAT CACTATGTTT TGCATCAGAG
AAGTTCCTGA TGATTGAGCA GGTGAGTAAG GTTGAGCGCA ACGGCGGCAC CTGGGGACTT
GGTCTAATCG AAGGCCATAA GCAACTCGAA CCCGATCACT GGTACTTCCC ATGTCATTTC
CAGGGTGACC AGGTGATGGC AGGCTCGCTA ATGGCTGAAG GTTGTGGTCA GTTGCTACAG
TTCTTTATGC TGCACTTAGG TATGCACACT CAAACTAAGA ACGGCCGTTT CCAGCCTCTT
GAGAATGCAT CACAGCAGGT TCGTTGTCGC GGACAGGTTC TGCCACAATC GGGCACCCTA
ACCTACCGTA TGGAAGTGAC TGAGATTGGC TTTAGCCCAC GTCCATATGC TAAGGCAAAC
ATCGATATCA TCCTAAATGG TAAGCCAGTA GTGGACTTCC AAAACTTAGG TGTGATGATC
CGTGAGGAAG ATGAGTGTAC TCGTTATCCA CTTCTTACTG CAGAGAGCAG CGCACCTGCG
GCTTCTATAG AGAGTGAGCC TTCAGCGGCA CTTAGCCAAA AGACTTATCA ACCAGCCTCA
GCTAACGCGC CACTCATGGC ACAAATTCCG GATCTGACTA AAGCGCCAAA CAAGGGCGTT
ATCCCAATTT CACACGTTGA GGCGCCAATC ACGCCAGATT ACCCGAACCG TGTACCAGAT
ACCGTGCCAT TTACGCCGTA TCACATGTTT GAGTTTGCGA CCGGTAACAT CGAAAACTGT
TTCGGCCCTG AGTTCTCAAT CTACCGCGGC ATGATCCCAC CACGTACACC TTGTGGCGAT
CTGCAGGTGA CGACTCGTGT TATCGAAGTA AACGGTAAGC GTGGCGACTT TAAGAAGCCA
TCTTCATGTA TCGCCGAATA TGAAGTGCCA ACGGATGCCT GGTACTTAGA TAAAAACAGC
CACCAAGCGG TAATGCCTTA CTCTATCTTG ATGGAGATTT CACTACAGCC AAACGGTTTC
ATCTCTGGTT ACATGGGTAC AACCCTTGGC TTCCCGGGGC TTGAACTCTT CTTCCGTAAC
TTAGATGGTA GTGGTGAGCT TCTGCGTGAA GTCGACCTTC GCGGCAAAAC AATCCGCAAC
GACTCACGCC TTCTATCGAC CGTTATGGCA GGTACCAACA TCATCCAGAG CTTTAGCTTC
GAGCTAAGCA CAGATGGCGA GCCCTTCTAT CGCGGTACTG CGGTATTTGG TTACTTCAAG
GGTGATGCAC TAAAAGATCA GCTTGGCCTT GATAATGGTA AGGTCACTCA GCCTTGGCAT
GTCGCTAAAG GTATTGCGGC AGATACAAAG GTTAACCTAC TCGACAAGAG CGGTCGTCAC
TTTAATGCGC CTGCAAGTCA GCCACACTAC CGCCTAGCCG GTGGACAGCT GAACTTTATC
GACTCTGTAG AAATAGTCGA TAACGGCGGC ACCGAAGGTC TTGGTTACCT CTACGCTGAG
CGCACCATCG ACCCAAGTGA TTGGTTCTTC CAGTTCCACT TCCACCAGGA CCCTGTTATG
CCAGGCTCTC TGGGTGTTGA AGCGATTATC GAAACCATGC AGACTTACGC CATCAGTAAA
GATCTTGGCG CTGGATTTAA AAATCCAAAG TTTGGTCAGA TCCTATCGAA CATCAAGTGG
AAGTATCGCG GTCAGATCAA CCCACTGAAC AAGCAGATGT CTATGGATGT CAGCATCACC
TCAGTTAAAG ATGTTGATGG TAAGAAGGTA ATCACAGGTA ATGCGAGCCT AAGTAAAGAT
GGCCTGCGTA TCTACGAAGT GTTTGATATC GCAATATCCA TCGAAGAGGC TTAA
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| Protein sequence | MSSSDKQAAK QSKIAIVGLA TLYPDAKAPG EFWQNVLDKR DSRTTLTNEK LGANSADYQG
VQGQSDRFYC DKGGYIENFS FDASGYQLPT ESLTGLDDSF LWALDTSRKA LIDAGITLGS
SSLERTGIIM GALSFPTTRS NDLFLPIYHS AVEKALQDKL GSRAFKLNPT NAHTVRSQSE
TALDNANGAI AHNASKIVAD ALGLGGAQLS LDAACASSVY SLKLACDYLS AGKADVMLAG
AVSGADPFFI NMGFSIFHAY PDHGVSVPFD SDSKGLFAGE GAGVLVLKRL EDAERDNDKI
YAVVSGVGLS NDGKGQFVLS PNPKGQVKAF ERAYAASDIE PKDVEVIECH ATGTPLGDKI
ELTSMETFFE DKLAGSKAPL IGSAKSNLGH LLTAAGMPGI MKMIFAMKEG ALPPSINISD
AISSPNNLFG TGTLPNQVQP WPAKAGNDKH HAGVSVFGFG GCNAHLLLES YSTQQAPSQQ
TASTQPLQAV KPDAMKISGL ASHFGPLNSI NQLNDAITSN TDGFISLPKK RWKGLEKHQE
LLAEFGLAAA PKGAYVDSFD LDFLRFKLPP NEDDRLISQQ LMLMKVTDEA IRDAKLKPGQ
KVAVLVAMET ELELHQFRGR VNLHTQLEQS LSALGVTLTG DEYQALEAIT MDSVLDAAKL
NQYTSFIGNI MASRIASLWD FNGPAFTISA AEQSVSRCID VAQNMMTSEA LDAVVIAAVD
LSGSFEQVIL KNSVEPVSID ASAAQNSGSW NVGEGAGAVV LVPDDANSAK SYGSLDALAF
GRVTEVNLVA DNLLTQAGVD INTVKVVETS IAPGSISSEP VSKLFPNAIS TSADSRVGHS
FAAAGMAGLL HGLLSLSIQN QSQQKAGAAI VANSSENQVS QLLISQSPTE NSALSARLSS
ELKSDAKHQL LKQVTLGGRD IYQHIVDTPL ASLAAIQGKL AQGSASTVVK QQKPLIMRPA
QTKEQKQAQA IPVSPTPVLG TPMKNKTIDV SAGDMAAFAQ NQQLTQEAHQ AFLKSRSAGM
KVADALLKQQ LAQVTGQEPV TSTAIPAPVS YENTLSTQPA PAAVLGSLPQ GKELKPDHAN
VPPYIAPTPE LKPCIWNYAD LVEYAEGDIA NVFGSDYAII DSYSRRVRLP TTDYLLVSRV
TKLDATMNEF KPCSMTTEYD IPLDAPYLVD GQIPWAVAVE SGQCDLMLIS YLGIDFENKG
DRVYRLLDCT LTFLGDLPRG GDTLRYDIKI NNYARNGETL LFFFSYECFV GDTMILKMDG
GCAGFFTDEE LADGKGVIRT EDEIKARNLV VKKTFNPLLD CPKSSFSYGD IHKLLTADIE
GCFGATHAGP AQPSLCFASE KFLMIEQVSK VERNGGTWGL GLIEGHKQLE PDHWYFPCHF
QGDQVMAGSL MAEGCGQLLQ FFMLHLGMHT QTKNGRFQPL ENASQQVRCR GQVLPQSGTL
TYRMEVTEIG FSPRPYAKAN IDIILNGKPV VDFQNLGVMI REEDECTRYP LLTAESSAPA
ASIESEPSAA LSQKTYQPAS ANAPLMAQIP DLTKAPNKGV IPISHVEAPI TPDYPNRVPD
TVPFTPYHMF EFATGNIENC FGPEFSIYRG MIPPRTPCGD LQVTTRVIEV NGKRGDFKKP
SSCIAEYEVP TDAWYLDKNS HQAVMPYSIL MEISLQPNGF ISGYMGTTLG FPGLELFFRN
LDGSGELLRE VDLRGKTIRN DSRLLSTVMA GTNIIQSFSF ELSTDGEPFY RGTAVFGYFK
GDALKDQLGL DNGKVTQPWH VAKGIAADTK VNLLDKSGRH FNAPASQPHY RLAGGQLNFI
DSVEIVDNGG TEGLGYLYAE RTIDPSDWFF QFHFHQDPVM PGSLGVEAII ETMQTYAISK
DLGAGFKNPK FGQILSNIKW KYRGQINPLN KQMSMDVSIT SVKDVDGKKV ITGNASLSKD
GLRIYEVFDI AISIEEA
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