| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3199 |
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| Symbol | |
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| ID | 5612085 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3858577 |
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| End bp | 3861495 |
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| Gene Length | 2919 bp |
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| Protein Length | 972 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640934137 |
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| Product | hypothetical protein |
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| Protein accession | YP_001474931 |
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| Protein GI | 157376331 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCATT CATATATTCC AACGCGCTTT CCCCTGAATA AATTGAGTCT GTTGGTCTTG
CTTGCCTGCT CGGCAACTTT GACGTCCCAG GCCAATGCCG AAGCACAACT CACCCCCAAC
CAGATCAACG GTACAATAAA ATTTACTAAC ACCAATCCGC AAATTGTTAA TGAACTGTCC
ACCACTGGTG CAGCCAAGGG GATCGCCTAC AGCTATATTC GCGCCGATAG TGTCGACCAC
ACCCCGATCC TGAATAACAC TGCCAACATA CCCGGTAACA AGGGGATGAC TCAGAATTTC
CAGTTGACTG TCGAGTCTTC TGAGAGCGGT ATTCAATATT CGGTTAAGCC TGATCTGCGA
ATGGATAATT ACGGCGAACG TTACCTTATG TCGCCTACCC TATCCACCCC GGTACAGCCG
GAGCCGGCGA CCGATGCTTC GGTCGTTTTT GAGCAGTGTG CATCACTGTT GGATATTCAA
TTTAAAAGCA GCCAGGGCGA ACCTGTTGCC GTCAACGGCG GCTATACCCT GGCCTATCAG
GAAACCACTG CCGGCTCGAA TCGCTTTGAA CTCAAGGCTC AGGATTTCGC ATTTCCTAAC
GGCACCAGCC AAGAGTTTTT GACGATACAA AGCCATGACG GTGTCACCAA GGTGAACGTC
ATGTATAACT TTGGCCTCGA TGCTTTCAGC GACACCGTAC GTAACATGTG CGAAGTTAAG
GTAACCGCAG CCTGTGATAC TGTGGTTCCG GTCGAGTGTG TGATCGATGA CGGAGCTATG
GAGCTGGGCG CTATCGAAGG TGATATTGAC GTCGTTGGTG AAGAGGTACT CGATAGTGGT
TACCTGTCAC GTATCTATGC CACGAATGGC CCATACCTCA ACTACCGCAT CGATCATGTT
GGTGGTGCTG GCCAATATAC TCTTGAAAAT TTGGTTCCAA GTGATGTGGT ATCTCCGGGC
ATTGGCTATT TTGTCTATGG TGAAATGGCG CTGCGCAAAG GATACCAGAC TGAATATCTG
CGTACTCCCT TCCTTAACAG CAGAAATGGC AGAGTGATGG TCGCCGCCGG TGAAACCGTC
GATCTGGCAG ACACTCTGGT ACTGAAGCCC GGCTATGTAA ATGGCCAGAT AACGTTAGCG
GGCCCTGAAG GCAATGGTAC AAACAACGGC CTTGCCGACC TGTATCGAGA TGCCGACAGA
GACAACAATG CCGATGGCAT TCCTGATTAT ATCTACCTGT CAAACTCTCA TGTCATGGCT
TCCGGTAGCT ATATCAAAAG CGAAGGCGCG ACCTATGATG CTACAGGTGG CTTGGCTCGT
GCCGGATTTA GCGGGCAATT TAATGCCGAA AGCGGTGAGT TCAATGGTGA TTATGAGTTG
ATCCTGGGAG GCTTGGCGGG CGAACCCTCT AAATGGAATG TCGGCGACTT TAAGCTAAGC
TTCCTCGATA CTGCAACAGC GAACACCAAT GGCAGTTATC AAAACTCACA ATTGCGGATC
CGGGACCTTG TTATCCCGCT ACAAGATATC ATCCCAGGTC AGAGCCAGAC CGTCGACAGA
AGCTATTGTT TTAATGATAT CCAGTTAGCG TACAAGTCCA CTTCTGGCGT TTTCTACCGA
CCAAACCTGA GAGCCATCGG CCGTTTCCAA GGTAGCGATT TTCAGGAAGA ACAAGCCAAC
TATCAGGTCA CTGTCGATAG CGCTTACGGT ACCCCGCTCT ATGCGTCTAC CGCAGCAGCA
AATGGCCTGG TGGTGATGAC TTTGCCTCAG GGTGCATACG ACATTACCCC GCAGGTCAGA
GCATTGAATC CCAACGGCGG CGAAACCTTA GCCGAACTGC CTCCGGTCAC TCTGGATGTA
GGTTGTGGTC AGGTAGTGAA GGCTTCGACC GAGATTCAGG TCAGTGTAGG TGAGCTTCCG
CAGGAGACCA GCGGTGATAC CTTAGTGATC ACGGCCAACG TGAACACCGA AACCCCTATC
GCCAAGGTTG ACTATGTGAA AAATGGCGAA GACCCAGTGG TTGTCTGTAC GCAAGACTGC
GCCGAAGATG GTGTAGTCAA CGTTGAGGTT CCGCTGGATG AAGGTGACAA TAACATCACA
GTAACGGCCA CTAACGAAGC CGGTACCGAG GCATCTGTAT CAGCCGATGT GACCTATACG
CCAGAGCAGC CAGCTGAACC AGAACTCCCC AGCTATGACG AGCTGAAATT TGTTCGCTGC
AACAATGTAG GGGCGCAGGT TTCGGTACTG GAAAGTGGCG CTCAGGTAGA CTTTGACATC
CTGGCCGTAG GCGGCGTTGG CAAGCTGAAC TACGACTGTG ATTCCGCCAG TGGCAGCGAG
TTCGCTCTGG GCAGAACCCC CGTTAGCTGC TCGGTCAACG ACACCGATGG ACACAGCGCC
CAGTGTGATT TCAAGGTCGA GGTTACCGAC ACCTGTGAAG CTGACGACAG CCTGCCTAAG
CTAAGTCATA TAGTAGAAAC TGATACCCTT TGGTCACCTA ACCACAAAAT GACCGATATC
GGCTTCGAGC TGAAGGTCAA CAGCTGTGAC CGTCAATTGA AATCAAGCCT GGAGACGACC
GTGTGGAGTG ATGAGCGTGA AGTTCCACAA CCCGGTTCTG GTGATGGCAG ATTTGCTCCG
GATGCCAAGT TCAGTGGTGA TGCTTTACGT CTTCGTCAGG AGCGTAGTGG TAATCAGGAC
GGTCGAGTCT ATCTGATACT CACACAGGGG CAGGATGCCG ATGAGCAGGA CGCATATACC
TGTAGCACAG TAGTCGTACC ACACGGTAAG AGCAAGAGTG CCAAAGCCGA CATTCAGGCT
CAGGCCGAAT ACGCCCTCGA CTATTGTCAG GCCAACGGCG CAGCACCAAC GGAATACTTT
CTGCATGGTG TTAGCAAGGA GATTGGTCCT AAGCAGTAA
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| Protein sequence | MDHSYIPTRF PLNKLSLLVL LACSATLTSQ ANAEAQLTPN QINGTIKFTN TNPQIVNELS
TTGAAKGIAY SYIRADSVDH TPILNNTANI PGNKGMTQNF QLTVESSESG IQYSVKPDLR
MDNYGERYLM SPTLSTPVQP EPATDASVVF EQCASLLDIQ FKSSQGEPVA VNGGYTLAYQ
ETTAGSNRFE LKAQDFAFPN GTSQEFLTIQ SHDGVTKVNV MYNFGLDAFS DTVRNMCEVK
VTAACDTVVP VECVIDDGAM ELGAIEGDID VVGEEVLDSG YLSRIYATNG PYLNYRIDHV
GGAGQYTLEN LVPSDVVSPG IGYFVYGEMA LRKGYQTEYL RTPFLNSRNG RVMVAAGETV
DLADTLVLKP GYVNGQITLA GPEGNGTNNG LADLYRDADR DNNADGIPDY IYLSNSHVMA
SGSYIKSEGA TYDATGGLAR AGFSGQFNAE SGEFNGDYEL ILGGLAGEPS KWNVGDFKLS
FLDTATANTN GSYQNSQLRI RDLVIPLQDI IPGQSQTVDR SYCFNDIQLA YKSTSGVFYR
PNLRAIGRFQ GSDFQEEQAN YQVTVDSAYG TPLYASTAAA NGLVVMTLPQ GAYDITPQVR
ALNPNGGETL AELPPVTLDV GCGQVVKAST EIQVSVGELP QETSGDTLVI TANVNTETPI
AKVDYVKNGE DPVVVCTQDC AEDGVVNVEV PLDEGDNNIT VTATNEAGTE ASVSADVTYT
PEQPAEPELP SYDELKFVRC NNVGAQVSVL ESGAQVDFDI LAVGGVGKLN YDCDSASGSE
FALGRTPVSC SVNDTDGHSA QCDFKVEVTD TCEADDSLPK LSHIVETDTL WSPNHKMTDI
GFELKVNSCD RQLKSSLETT VWSDEREVPQ PGSGDGRFAP DAKFSGDALR LRQERSGNQD
GRVYLILTQG QDADEQDAYT CSTVVVPHGK SKSAKADIQA QAEYALDYCQ ANGAAPTEYF
LHGVSKEIGP KQ
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