| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3190 |
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| Symbol | |
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| ID | 5612193 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3849791 |
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| End bp | 3850798 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934128 |
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| Product | permease |
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| Protein accession | YP_001474922 |
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| Protein GI | 157376322 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0701] Predicted permeases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCCAAA TTTTCACTGA ATTTGCCAAC TGGCTGGTCT TCGATCTGCT CGGCTTACAA
ACCGAGACGA AGCTGGGCGA TGCGGCACAT TTCTTTGTAG AAGATACCAG CAAGATATTT
GTGCTCTTGA TAGTGATGAT CTACGTCATT GGGGTCATTC GGGCCTCGTT AGATGTCGAG
CGGGTTCGTG ATTATCTGGC CGGTAAAAAT CGCTTTGTCG GCTATATGCT TGGCTCGATG
TTTGGTGTGA TCACCCCTTT CTGCTCCTGC TCGAGTATTC CTGTTTTTTT AGGCTTCACC
TCTGCGGGGA TCCCACTTGG GATCACTATG GCATTTCTGA TCACCTCTCC CTTAATCAAT
GAAGTTGCGG TATTGCTCTT AATGAGCCTA CTGGGGTGGA AGTTCACCCT GCTATATATC
GCTGTAGGCA TGTCTGTAGG CATGTTAGGT GGTCTGTTTC TCGATGCTAT AAAGGCAGAA
CGTTGGTTAC AGTCTTTTGC CGCTGACGCC TTAAAGCGTG GGCAGAATCA ACAGGCGAAA
GGTATTGAAG CTCATCTGGT CCAAACTCAA AAACTGACGC TGAAAGAGCG ACACGAGTTT
GCGAAACAGG AAACGATTCA AATTTTCAAA CGGGTATGGA AGTGGGTATT TATCGGCGTG
GGACTTGGCG CGGCGCTTCA TGGCTTTGTT CCCGCAGGCT GGATAGAGTC CCATTTAGGT
CAGGGACAGT GGTGGTCAGT ACCTGCTGCC GTACTGCTCG GGATCCCGTT ATACTCTAAC
GCCACAGGCG TCATACCTGT AATGGAAAGC CTTATCATCA ATGGTTTGCC CATTGGTACC
ACGTTGGCAT TTTGTATGAG TACAGTTGCA GCCAGCTTTC CTGAATTCAT CTTGCTGAAA
CAGGTTATGC AATGGCGTCT GTTAGCCACT CTGTTTTTTG TTCTGTTGAC TGCCTTTACC
CTTGTTGGTT GGGTGTTCAA TGCTTTCTCT CCACACTTAT TAGGATAG
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| Protein sequence | MFQIFTEFAN WLVFDLLGLQ TETKLGDAAH FFVEDTSKIF VLLIVMIYVI GVIRASLDVE
RVRDYLAGKN RFVGYMLGSM FGVITPFCSC SSIPVFLGFT SAGIPLGITM AFLITSPLIN
EVAVLLLMSL LGWKFTLLYI AVGMSVGMLG GLFLDAIKAE RWLQSFAADA LKRGQNQQAK
GIEAHLVQTQ KLTLKERHEF AKQETIQIFK RVWKWVFIGV GLGAALHGFV PAGWIESHLG
QGQWWSVPAA VLLGIPLYSN ATGVIPVMES LIINGLPIGT TLAFCMSTVA ASFPEFILLK
QVMQWRLLAT LFFVLLTAFT LVGWVFNAFS PHLLG
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