| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3189 |
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| Symbol | |
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| ID | 5612192 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3849052 |
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| End bp | 3849642 |
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| Gene Length | 591 bp |
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| Protein Length | 196 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934127 |
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| Product | sigma-24 (FecI-like) |
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| Protein accession | YP_001474921 |
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| Protein GI | 157376321 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAAGAAC CCAATTTGAC TCCCAATGAA AACAACACCA TGCCTTGCCT GATGGAGGCC
TGGCTTCAAC ATCAGAGTCC ATTGTCATTT TGGTTAAAAA GCCAAACCCG CGACGACTCC
CTGGCCCAAG ATATATTACA TGACGTCTTT ATTCGTGCCA TGGACCAAAA ACAAGCATTC
TGCGACATTC GAAATACCAA GGCATGGTTA TTCAGAGTCG CTGGAAACCT GCTTGTTGAC
CATGCCAGGA AACAGCAAGT GTTACCTATG GTTGAAGATG TGGAACTCAA GGAGTCAGAG
TCCTACCTCA CCGATAAGTA TGTCATCGAT AAAGATGTTG TCGATAAATT AGCCAACTGT
TTACCCAGAG TGTTAAATGA ACTCCCGCCA CAGGACTGTG AAATCATCGA AGCGTGCGAT
ATTCACGGTA TGCCTCAGGG AGAGTACGCC ACTCGCCATG GGCTCACCCT CAGTGCGACT
AAATCACGTC TGCTTAGGGC CCGTTTAAAA CTTAAACAAC AACTGAGCAA CTCCTGCCAA
GTCAAACTGG ATGAAAATCA AAACGTTTGC TGCTACACAC CACGAAAATA A
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| Protein sequence | MKEPNLTPNE NNTMPCLMEA WLQHQSPLSF WLKSQTRDDS LAQDILHDVF IRAMDQKQAF
CDIRNTKAWL FRVAGNLLVD HARKQQVLPM VEDVELKESE SYLTDKYVID KDVVDKLANC
LPRVLNELPP QDCEIIEACD IHGMPQGEYA TRHGLTLSAT KSRLLRARLK LKQQLSNSCQ
VKLDENQNVC CYTPRK
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