| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3188 |
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| Symbol | |
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| ID | 5611888 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3847575 |
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| End bp | 3848828 |
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| Gene Length | 1254 bp |
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| Protein Length | 417 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934126 |
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| Product | HD domain-containing protein |
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| Protein accession | YP_001474920 |
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| Protein GI | 157376320 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2206] HD-GYP domain |
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| TIGRFAM ID | [TIGR00277] uncharacterized domain HDIG |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTCGC TTTCACAGTT ACAGGTAGAT CTTCGTCAGA TGATTATTGC GATTGAGACC
GCAGTTTCTC AAGTCGGGAT GAACGATACA AACCACGGTA AACGCGTCGG CTATATCGCC
AGCCAGATCG GGCATCAAGT CGGTTTCAGT GACGGTGAGA TCCAGTATGC ATTTGAACTG
GGCTTACTCC ACGATTGCGG CGTTTCCACC GAGCAGATGC ATACAAATCT GGTCAACTAT
TTTGACTGGA GTGACGCCGA TATTCACTGC AAAATTGGCT ATCGTTTATT AAAAGATTTT
GAGCCATTGT CAAAATTTGC CACGCCGATT TTGTATCATC ACACCCCCTG GGAAAAACTA
AAGCAGATAG ATCTGACTCA ACAAGATGCA CGCATGGCCA ACCTCATCTT CCTTGCGGAT
CGCATCGATA TCATGGCTGC CACACATTAT GAATCCGATA TCTTGCTTGC CAGAAAAGAG
ATAGTAAATA CCATCGTTAA TTATTCCGGC AGCTATTTTG CTCCTAAACT GATCGATGCT
TTCACAGAAC TGGAAGCATC TGAAGCCTTC TGGATTGCAT TGGAAAACCG TCACATCACC
CGTTATACAT GGGACATGGG CCAGTTAAAA ACCAGCCAGT TATTAAGCAT CGCTCAGCTT
AAACAGCTCT CCTTGATCTT GGCTTATATC GTCGATCAGA AGAGCTCTTT TACCGCACAG
CACTCTATCA GGGTGGCTCA GCTAGCCCGT TACCTTGCGT CAATCTATGG TTTATCTGCT
GAACAGTGCG AAAAAATAGA AGTTGCAGGC TTACTGCATG ATCTCGGCAA ACTGCACACA
CCAGACAGCA TTTTAGAAAA ACCCGGCCCA CTCAATGAGA TTGAGCTCTC AATCATGAAG
CAGCACAGCT ACGAAACCTT TGAAATTCTT CGTCATATAG ATGGACTCGA TGAAATTGCT
CACTGGGCGG CCTTCCACCA TGAGGGACTC AACGGTGTCG GCTACCCGTT TCACCCCAAC
AAAAAAGAGT TGAGCGTAGA GGCCAGGATC ATTGCCGTTG CCGATATTTT TCAGGCCTTA
GTACAAGACC GGCCCTACAG GGATGGCATG AAATTAGATG AGGTACGCAA AATTTTAGAA
AACTTTACCA ATAACGGTAA GCTGGACGCC GATGTCGTCA ATCTGGCAAT CGGCCACGAA
GAGAGGTGCT TCAGCATAGC CATTGGCGAT AGCATTCGCG GAGCTAACCC GTAG
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| Protein sequence | MSSLSQLQVD LRQMIIAIET AVSQVGMNDT NHGKRVGYIA SQIGHQVGFS DGEIQYAFEL
GLLHDCGVST EQMHTNLVNY FDWSDADIHC KIGYRLLKDF EPLSKFATPI LYHHTPWEKL
KQIDLTQQDA RMANLIFLAD RIDIMAATHY ESDILLARKE IVNTIVNYSG SYFAPKLIDA
FTELEASEAF WIALENRHIT RYTWDMGQLK TSQLLSIAQL KQLSLILAYI VDQKSSFTAQ
HSIRVAQLAR YLASIYGLSA EQCEKIEVAG LLHDLGKLHT PDSILEKPGP LNEIELSIMK
QHSYETFEIL RHIDGLDEIA HWAAFHHEGL NGVGYPFHPN KKELSVEARI IAVADIFQAL
VQDRPYRDGM KLDEVRKILE NFTNNGKLDA DVVNLAIGHE ERCFSIAIGD SIRGANP
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