| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3187 |
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| Symbol | |
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| ID | 5611887 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3845495 |
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| End bp | 3847420 |
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| Gene Length | 1926 bp |
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| Protein Length | 641 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640934125 |
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| Product | methyl-accepting chemotaxis protein-like protein |
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| Protein accession | YP_001474919 |
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| Protein GI | 157376319 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGATTA AAGGACAGTT TATTCGTTGC GTTCTCCCGG TGATCTTAGT CGGTTTACTG
GGCGTGACAC TCTTCTCGAC TCAGGAGTCG AGTCAACAGA TCCACCAACT CAACGAAGTA
AAAGTGAAAT CGTCCCATGC ATTGCTCGTT AAAAACCTAA GTAATTGGTA TTTTTTAAAC
ACTCAACTCG CGACCTCCCT GGCTCAAAAT GCTCCCGATG TAATTAGACT AAAACAAAGC
CCCAATGATG TAGTAGATCT TTCGGAAAAT TTAACCCGAT TTGCAACTAA CTATCATCTT
AGAAACGCCG CACTGCTCGA CACCAACGGA GTTGCGATAT CTGCCAGCAA TCCTGAGCGT
ATCGGCTCTG ACTATCATAA GATGAATTAC TTCAATGAAA TTAAGCAGGG TGCCGAGCTC
TATGTTGCCC CGCCCAGACT GAGCCGTATT GACGGTAAGC CCTTACTGAC TATATCGGCA
AGGACCAGGT TTGAGGACGT CTTGTTTATC AGCTTACCTC TGGGCGAATT TTACAATCGC
TACATTAATA TCACGGAGCA AGATAAGGAT AACTTAAGCT TTATTTTAAA CAGTGACTGC
ACCCCCCTGG CCCACCCGAA TTCGGAATTA GTCCGTAATA AGAGCCAACA ATACTCCTCT
TTGTGTAAAC AGAACGGACT CATCGACTGG CATGAGGGTG ATGAGCCCTA CACTGGTTGG
ATTGAGAGAG AAGAAAATAC AGGCTGGGTT GTCATCTCAG GTAGTAAGCA GTCACCGATA
CTCATAGCCG AAAATCGAAT GATATACTCA AGCTTAGCCA TAACCATATT GACTGCAATC
GTCGTTTTAA GCGTGTTAAT ACTATTAATC AACCATATTT CCAAAATGAT CCACATTTTA
GTATCGGCTA TCGATGATCT TGCAAAGGGA GATATTGAAC TCCAATCAAT TTCTAAGACA
CCTTGGGTAA AGCTACTCAA TAGAGAGGAT GAGTTAGGTC AAATCGCCAA TGCTCTGCAA
CGGCTGATCA AGGTGCAAAA AAATCATATC TCTCATGCAG GTGATATCGC TAACGGTAAT
CTAAGGGGAA ACATAGTACC CTGCAGTAGT GTCGATAAAC TTGGTCATTC ATTGAAAAAA
ATGCAAAGTG ACCTTAACCA AATTATTGCT AACGTGATTA CTAAAGCCGG TGTAATAGAT
AACAGTTCGA TGCAGTTGGC CCAGCACGGG AACTTGGTCG CCGACGGAAC CAGCATTCAA
GCAAAATCAA TCGAATCAAC AAGTGCGGCA ATGAATCAGA TCGAAAGTCA GATCACCTTA
AATTCCGATT CAGTCTCGAG TCTGCATTCA CATTCTCAAC AAGCCTTAAG TGAAGCAAAG
CTTGGGTTGG TGTCCATGGA AAAATTAACT CAATCCATGC AAGAGATCGC TCACTCAGGA
GCCAGAATTG AGCAGATCAT GGCTGACATT ACTCAGATAG CGTCACAGAC CAACCTTATC
TCTCTCAATG CCGCTATAGA AGCGGCGAGA GCCGGCGAGC ACGGACGGGG CTTTTCAGTA
GTCGCCGAGG AGGTACGTAA TCTGGCACTA CGTTCGAGTG AGGCGGCGGA GCGCAGTTCA
ATATTAATCA AGGAGATCAT AAGTAAAATT AGCACAGGCG AGCACGACTC ACTCAAGAGC
GCGGCGACAT TCAATCGGAT CGTCAATCAG ATGAATGAAA CCGCCCTGCA GATGTCACTC
GTCGCCCAAG GCACTGAAGA ACACACGGCA GCGGCTATCG AGCTCAATCA AGGATTACAT
AACATTGATA ATGTTATTCA CTCGACCTCT CAAACGGCGG TAGAGACGGT TAACCAGTGT
CATCAACTGA TGGAGTCTAG TTCATCACTG CAGGAAGCGT GTTCTCACTT CAAGCTGAGT
GCTTAA
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| Protein sequence | MQIKGQFIRC VLPVILVGLL GVTLFSTQES SQQIHQLNEV KVKSSHALLV KNLSNWYFLN
TQLATSLAQN APDVIRLKQS PNDVVDLSEN LTRFATNYHL RNAALLDTNG VAISASNPER
IGSDYHKMNY FNEIKQGAEL YVAPPRLSRI DGKPLLTISA RTRFEDVLFI SLPLGEFYNR
YINITEQDKD NLSFILNSDC TPLAHPNSEL VRNKSQQYSS LCKQNGLIDW HEGDEPYTGW
IEREENTGWV VISGSKQSPI LIAENRMIYS SLAITILTAI VVLSVLILLI NHISKMIHIL
VSAIDDLAKG DIELQSISKT PWVKLLNRED ELGQIANALQ RLIKVQKNHI SHAGDIANGN
LRGNIVPCSS VDKLGHSLKK MQSDLNQIIA NVITKAGVID NSSMQLAQHG NLVADGTSIQ
AKSIESTSAA MNQIESQITL NSDSVSSLHS HSQQALSEAK LGLVSMEKLT QSMQEIAHSG
ARIEQIMADI TQIASQTNLI SLNAAIEAAR AGEHGRGFSV VAEEVRNLAL RSSEAAERSS
ILIKEIISKI STGEHDSLKS AATFNRIVNQ MNETALQMSL VAQGTEEHTA AAIELNQGLH
NIDNVIHSTS QTAVETVNQC HQLMESSSSL QEACSHFKLS A
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