Gene Ssed_3186 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3186 
Symbol 
ID5611886 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3844311 
End bp3845249 
Gene Length939 bp 
Protein Length312 aa 
Translation table11 
GC content45% 
IMG OID640934124 
Product4'-phosphopantetheinyl transferase 
Protein accessionYP_001474918 
Protein GI157376318 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG2091] Phosphopantetheinyl transferase 
TIGRFAM ID[TIGR00556] phosphopantethiene--protein transferase domain 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.214486 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGCACCTA AATTATTACA ACCTTGTTCA TTGCCGACAG TTAAGCTCTA CTTTTGTCCT 
CTGGATTTTA CCTCGATGAA CTTTGCGCAA GCTCAAATCA TTCAATCTTG GCTGAGTGAA
GATGAGTCGG TAAAGGTATC GCGTTATATT CAGCTCACTG CACGGGATAA AGGGTTAATG
GTGCGCGGGT ATCTGCGTGG TATCTTGTCG ATCTGTTCAG GGTATAAACA TGATGAGCTT
ATAGGTGACA AGGGGATCGC CCCCGGCGAT TGGCGCTTTC AATATGGAGA GAAGGGCAAA
CCAAGCTTGG TTCCTGAGCA GAGGGAGATG ACGGGGCTGG AATTTAATAT CAGCCACAGC
GGTAATTGGT TAGTCATCGC TGTAATCAAA CAGTCAAGTG GTCAATCAGG CTCTTTAGGG
GCTGCGTCTA TGTCAGAGAA TATCGAGCTT GGTGTCGATA TCGAGCGCTA TCGGACAAGT
ACCAATATCT ATCCGATATT GAATCATTAC TTTACTCAAG ATGAGTCTGA GTCGTTATTG
GCGCTGGATG AAGACGCTCA ACGTGAGCGA TTCTTCGACC TCTGGGCGCT GAAAGAGTCT
TATATAAAGG CTAAAGGCTT AGGTTTAGCC CTGTCGCTTA AATCATTTAG TTTTGGGTTT
AGCCATGCAA CGGACCATGA GTTAGCCCTA TATGAAGATA ACACGCTTAT CGAAACATTA
AGTGTGCTGA GTAACCTGGA GCTTAACTTC CATAAAGAGT CGTCTCTTAC AGAGTCGAAG
CGAGATGCTG TTAGCAAATC TGCAAGTGAT GAGTGGTCAC TGTTTTTAGG ACGGTTAAAT
TCAGAGTATC GTTTCGCCGT CAGTATTGGC TCTGCAGGTG ACTTGGGTTT AGAGGCGCAT
AAAATGGATC TGAGTCGTTT GCTGACTCGA TATCAATAA
 
Protein sequence
MAPKLLQPCS LPTVKLYFCP LDFTSMNFAQ AQIIQSWLSE DESVKVSRYI QLTARDKGLM 
VRGYLRGILS ICSGYKHDEL IGDKGIAPGD WRFQYGEKGK PSLVPEQREM TGLEFNISHS
GNWLVIAVIK QSSGQSGSLG AASMSENIEL GVDIERYRTS TNIYPILNHY FTQDESESLL
ALDEDAQRER FFDLWALKES YIKAKGLGLA LSLKSFSFGF SHATDHELAL YEDNTLIETL
SVLSNLELNF HKESSLTESK RDAVSKSASD EWSLFLGRLN SEYRFAVSIG SAGDLGLEAH
KMDLSRLLTR YQ