| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3183 |
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| Symbol | |
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| ID | 5611558 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3839296 |
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| End bp | 3840204 |
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| Gene Length | 909 bp |
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| Protein Length | 302 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640934121 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001474915 |
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| Protein GI | 157376315 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTCAAG ATAAACCTCT GGATCTTAAC TTACTTAGAG TCTTCTCTAT CGTGTATAAA
ACAGCTTCAT TCAGCCGCGC TGCTGAAGAG CTGGATTTGA CTCAATCATC GGTCAGTAAT
GCCATTGCCA GATTGAAATT ATCTATTGGT GAGGAGTTGT TTATTCGGGT TGGGAGAGGC
GTCAGGCCAA CCTCTGTTGC GTTGAACCTA TACCAGCAAC TTGAGCAACC TTTATTAGCT
ATTGAACAAG TGGTATCAAG TTTACACCTT TTTGATCCTA AGGTTAGCGA ACGAACCTTC
TATGTTTACG CCAATGAAAC CATTTTTCAT CTGCTGCAAT CGCAAGTAGA TGAATACCTG
GTTGATAGTG GTATTGATAT TGTGTTTCGT GAAACCCCTA TAGTGGAGGA GCAGATAGAG
ATGGACCTTC AACTGGAGAA GGTTGATCTG GCCATTGATG TGTCTCAACC TAACTTAGCT
TCCTTCGCTT CAATTAAGGT GTTACAGGAT AGATTGAATT GTGTAGTCAG AAAAGATCAC
CCCAGAATTC AGGGAAGTTT AAGCCGCGAG CAGTATTTCG CTGAAAAGCA TATTATTCAT
AATATGCGCC GCTCAAATTT GAGCATGGCT GATCTGATGA CCAAAGAGGT TCTTCCCGCA
AGAGAGATGT ACGCTGAGCA ATCATCTCTG TTAAGCATGT TGGCTACCGC GGCTAAATCG
GATGCTATAG CGGTTGCGAC TCAATCATAT ACCGATGCAT ATGCTGACTT GTTTGGTTTG
CAGGTATTGG CGCTTCCTGT TGTTACTGAG CCGATTGATC TTTATATGGT GTGGAGCAGT
AAGTTAACCC GAAATCCGGC TAATAAATGG CTAAGAGATA CACTCTTGGG TCTGATAGAA
TCAAGATGA
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| Protein sequence | MSQDKPLDLN LLRVFSIVYK TASFSRAAEE LDLTQSSVSN AIARLKLSIG EELFIRVGRG
VRPTSVALNL YQQLEQPLLA IEQVVSSLHL FDPKVSERTF YVYANETIFH LLQSQVDEYL
VDSGIDIVFR ETPIVEEQIE MDLQLEKVDL AIDVSQPNLA SFASIKVLQD RLNCVVRKDH
PRIQGSLSRE QYFAEKHIIH NMRRSNLSMA DLMTKEVLPA REMYAEQSSL LSMLATAAKS
DAIAVATQSY TDAYADLFGL QVLALPVVTE PIDLYMVWSS KLTRNPANKW LRDTLLGLIE
SR
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