| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3182 |
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| Symbol | |
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| ID | 5611557 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3838297 |
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| End bp | 3839199 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640934120 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001474914 |
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| Protein GI | 157376314 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTCTGC ATAAGCAATT TGATGTGAAT CTACTTAGGG TTTTTTTAGC TGTATGCCGT
ACAGGGTCGT ACACCTTAGC TGCTGATGAG TTAGATCTGA CCCAGCCCTC AGTGAGTAAT
GCTATCTCAC GTTTTAAAGC CGTTATTGGA GAGGAGCTTT TTGTTAGATC GGGTCGCAAC
ATAAAACCGA CAGCCATGGC CAATTATCTC TATGAGCAAC TTAATGACTC ATTTTCTAAT
ATTGAACAGA CAATCTCAGG CTTAGAGGGC TTTAATGCTG CGACATCTGA GCGTCAATTC
GTTATTTTAG CCGGAGATGT GGTTAGTCAC TTCCTGCAGC CTGCTCTGGA GAAGATAGTT
AAAGATCTTC CTATTGAAAT TGTTTTTCGG GAGCCGCCGG ATCATGATGA AGATATTATG
GAAAAGCTAT ATCTGGAGCA AGCTGATCTC GTAATCGATA TGCAACTGCC TATGGATCTT
CGTTTCGAAA AGAGGTTGCT TATGCGCGAA CTCCCCATTT GCGTAGTAAG CAAAGAGCAT
CCTCGTATTG GGGATAAGAT ATCCCGGGAT GAGTACTTTG ATGAAAGACA TGTCGTGATC
AAGATGAGGA GGTTTAATCT TACTGCCGTA GATCTATTGA CTGACGAGGT CTTACCCGCA
CGTAAGGTTT ATAGTGTTAA GTCCTCATTA TTGACGGCTT TTGATAGCCT GGCTTCCAGT
GATTCACTTT GTATATCTCC CAGAAGGTAT GCTGAAGAAT ACACAGATAT GTTTAACCTT
AAGTTACTGG AGCCACCTTT TAAAATGAAT GGTATTGATA TTGAGATGGT GTGGAAGCGT
AAACATGATA AAAACCCCGC ACATATCTGG CTTAGAGAGC AGGTGTTATC TTTAGTTAAG
TAA
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| Protein sequence | MTLHKQFDVN LLRVFLAVCR TGSYTLAADE LDLTQPSVSN AISRFKAVIG EELFVRSGRN
IKPTAMANYL YEQLNDSFSN IEQTISGLEG FNAATSERQF VILAGDVVSH FLQPALEKIV
KDLPIEIVFR EPPDHDEDIM EKLYLEQADL VIDMQLPMDL RFEKRLLMRE LPICVVSKEH
PRIGDKISRD EYFDERHVVI KMRRFNLTAV DLLTDEVLPA RKVYSVKSSL LTAFDSLASS
DSLCISPRRY AEEYTDMFNL KLLEPPFKMN GIDIEMVWKR KHDKNPAHIW LREQVLSLVK
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