| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3167 |
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| Symbol | |
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| ID | 5610910 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3825018 |
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| End bp | 3826487 |
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| Gene Length | 1470 bp |
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| Protein Length | 489 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640934105 |
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| Product | PTS system, glucose-like IIB subunint |
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| Protein accession | YP_001474899 |
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| Protein GI | 157376299 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1263] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific
[COG1264] Phosphotransferase system IIB components |
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| TIGRFAM ID | [TIGR00826] PTS system, glucose-like IIB component |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCTGCAA AGCTGGAAAG ATCTAATCGA CATGGAAACC GTTGCTTAAG TTATATTACT
CAGCATTGGT TTAAATTTGC GCAAAGACTC AGTCAGGCGT TGTTGATCCC TATTGCCATT
TTACCCGCGG CAGGGGTCAT GATTGGTTTG GCCAGTAATC CCATCCCATT TATTCCTGAG
CCGTTGTCGG TACTCATGTT AACTGTGGGC AATCTCATTT TTACCATGAT GCCTATGTTA
TTTGCCGTCG CGGTATCGAT AGGTTTTTGT AAAGATCAGG GCATCGCTGC ATTCAGTGCT
GTATTTGGCT TTGGTGTATA CCTCTCAAGC ATGGCCGCCT TGGCTGAAGT GTATCAAGTT
CCAACTCGAA CCCTCTTGGG GGTGGAGACC ATAGATACAG GGATTGCCGG AGGAATGCTT
GTAGGGGTTG TAACCTGTTT TGCGGTAAAT CAAAGTCAAA AGTTACGTCT TCCTGCGGTT
TTTTCTTTCT TTGAAGGAAG GAGAAGTGCC CCTCTGTTAA TGATCCCTTT CAGCATTATT
CTTGCCTATC TGCTTGTTCA TATCTGGCCG TCGATGTCCT TATGGATAGA GCGGTTTTCC
AATTGGGTCG TATATCAAAA GCCTGCTGAA GCCTTTGCGC TGTATGGTGC AGTAGAAAGA
CTACTCATCC CATTGGGATT ACATCATATC TGGAACGCGC CGTTTTATTT AGAGATGGGG
CAGTACGTTA AAGATGGGGA AGTGATAAGA GGTGAAGTGG CTCGGTATCT TGCCGGAGAT
CCGCTTGCAG GAAATTTGGC AGGTGGTTAC TTGATAAAAA TGTGGGGGTT ACCTGCAGCT
GCTCTGGCTA TTTGGCGTTG TGCCGATAGA GGGCAGAGAA ACAGAGTCGC TGGCATTATG
ATATCAGCAG CCTCTGCAAG CTGGCTTACC GGTGTTACTG AACCTATCGA ATTTGCATTC
ATGTTTATTG CACCTCTGTT ATTTTTACTG CATGCCTTGA TGACGGGGAT CGCTTATGCG
GTATGTATTA CGCTTGAAAT CCATCACAGT ATTGTATTTT CCCATGGGCT GGTTGATTTT
TCTCTGTTGT TTGGCAATGC TAAAAATAGC GAGTGGTTTT TGATCTTAGG GCCATTGACG
GCAGTGATTT ATTACCTGAT TTTTAGAGGG GCTATTTTAC TCTTTAACCT CAAGACACCC
GGACGAATGG AGCAAGATAG CAAACCTCAA GCCGGCTTAC TGACGATTGT CAGGGCGCTT
GGAGGGACCG ATAATATCCT CGATTTAAGT GCTTGTTTGA CTCGCTTAAG AATAAGTGTA
AAGCAACCTT TATTAGTCGA TAAATTAAGG TTGAAACAGT TGGGTGCCAA AGGGGTTGTC
GTTGTCGGCA ATGGTGTGCA GGTTGTTTAT GGTACTAAGG CCGAAAGTAT ACGCCGACTA
TTACAAAGGT ATATCGATAC ACGTTCTTAA
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| Protein sequence | MAAKLERSNR HGNRCLSYIT QHWFKFAQRL SQALLIPIAI LPAAGVMIGL ASNPIPFIPE
PLSVLMLTVG NLIFTMMPML FAVAVSIGFC KDQGIAAFSA VFGFGVYLSS MAALAEVYQV
PTRTLLGVET IDTGIAGGML VGVVTCFAVN QSQKLRLPAV FSFFEGRRSA PLLMIPFSII
LAYLLVHIWP SMSLWIERFS NWVVYQKPAE AFALYGAVER LLIPLGLHHI WNAPFYLEMG
QYVKDGEVIR GEVARYLAGD PLAGNLAGGY LIKMWGLPAA ALAIWRCADR GQRNRVAGIM
ISAASASWLT GVTEPIEFAF MFIAPLLFLL HALMTGIAYA VCITLEIHHS IVFSHGLVDF
SLLFGNAKNS EWFLILGPLT AVIYYLIFRG AILLFNLKTP GRMEQDSKPQ AGLLTIVRAL
GGTDNILDLS ACLTRLRISV KQPLLVDKLR LKQLGAKGVV VVGNGVQVVY GTKAESIRRL
LQRYIDTRS
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