| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3164 |
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| Symbol | dapD |
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| ID | 5610749 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3822527 |
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| End bp | 3823351 |
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| Gene Length | 825 bp |
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| Protein Length | 274 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934102 |
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| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
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| Protein accession | YP_001474896 |
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| Protein GI | 157376296 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
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| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.922231 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.938148 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGGCTT TACGCCAACG CATAGAGGCA GCTTTTGAAG CTCGCGCAGA AATAACCCCT
AACTCAGTAG AACCGAGCGT TCGTGCTGAT GTAGAGAAAG CAATTAGCAT GCTTGATAAA
GGTGAAGCTA GAGTTGCTGA GAAAATTGAT GGCCAGTGGC ACGTTCATCA GTGGCTAAAG
AAAGCCGTTC TGCTCTCTTT CCGTATCTTC GATAATGGTG TTATCGATGG TGGCGAAACG
AAATACTTCG ATAAAGTTCC CATGAAATTT GCCGATTACG ATGAAGCTCG CTTCAAAGAG
GAAGCAATCC GAGTCGTTCC GCCAGCCACG GTACGTAAAG GCTCTTTCAT CGGTAAGAAC
ACGGTTCTGA TGCCTTCATA TGTGAACCTT GGCGCCTATG TTGACGAGGG TACTATGGTC
GATACCTGGG CCACGGTGGG CTCTTGTGCT CAGATAGGTA AGAATGTTCA CCTATCTGGC
GGTGTTGGCA TTGGTGGTGT ATTGGAGCCA TTACAAGCAG GGCCAACTAT CATCGAAGAT
AACTGTTTCA TAGGTGCACG TTCTGAAGTC GTTGAGGGCG TCATTGTCGA AGAGGGTAGC
GTTATTTCCA TGGGCGTTTA TCTTGGACAA AGTACCCGTA TCTATGACCG TGAAACAGGT
GAGGTTCATT ACGGAAGAGT ACCGGCTGGC TCGGTTGTCG TTTCAGGGAC CTTACCTTCA
AAATGCGGAA CCTATAATCT TTACGCCGCT ATTATTGTCA AAAAAGTTGA CGCTAAGACT
CGCGGTAAAG TGGGCATCAA CGAACTATTA AGAATCGTTG ACTAA
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| Protein sequence | MEALRQRIEA AFEARAEITP NSVEPSVRAD VEKAISMLDK GEARVAEKID GQWHVHQWLK
KAVLLSFRIF DNGVIDGGET KYFDKVPMKF ADYDEARFKE EAIRVVPPAT VRKGSFIGKN
TVLMPSYVNL GAYVDEGTMV DTWATVGSCA QIGKNVHLSG GVGIGGVLEP LQAGPTIIED
NCFIGARSEV VEGVIVEEGS VISMGVYLGQ STRIYDRETG EVHYGRVPAG SVVVSGTLPS
KCGTYNLYAA IIVKKVDAKT RGKVGINELL RIVD
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