Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3163 |
Symbol | |
ID | 5610748 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 3819755 |
End bp | 3822334 |
Gene Length | 2580 bp |
Protein Length | 859 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640934101 |
Product | PII uridylyl-transferase |
Protein accession | YP_001474895 |
Protein GI | 157376295 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG2844] UTP:GlnB (protein PII) uridylyltransferase |
TIGRFAM ID | [TIGR01693] [Protein-PII] uridylyltransferase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.258503 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.795531 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACCACGG AATCAGCTCA ACTCGCCAAA GCTCAGCTAC TCTCACAAAA CCACGACCTC CTCACCCGCT TTCGTCATGA GGAGTCGATC AAAAACTTAG TCGCACAACG ATGCCAATTC GTCGATGAAT TATTACAGCA ACAGTGGCAA GAGCAGCAGT TAGATCAATT TCCCATCGCG CTCATTGCCG TTGGAGGTTA TGGCCGCGCC GAGCTGCACC CCCAGTCCGA TGTCGACCTT CTTTTCCTGA TCGAGACAGA ACTATCCCCC GAAGCCGAAC AGGCATTAAG TCGGTATATC GCTTTTTTAT GGGATGCTGG TCTGGAGGTC GGTCACAGTG TTCGCAGTCT GGCTCAAACC CTTGAGCAAG GGCGAAATGA CATCACCATA GCCACTAATC TTCTCGAAGC AAGATTGCTT TGTGGTCCCC AGACACTTTA TCATTCTTTA CACCTGAGTA TCAGAGCCGA TGATTTTTGG CCCGCAAGTG ATTTTTACAT CGCCAAACGT GACGAACAGA TCGCACGCCA TGCTAAGGCA AGCGCATTCG ATCTTGAGCC TAATATCAAG ACCTGTCCTG GCGGTTTAAG AGACATCCAT ACCATCTCCT GGGTTGCTAT GCGCTACTTT GATGCTGCCA ACATTGAAGC GCTCGTCGGC CATGGGTTTC TCGAGTCCGA TGAGCTCAAT GAACTGCTCG AGTGCCAGTC CTTCTTATGG GAATTAAGGT TCGCGCTTCA TTTGATCTCC GGACGGGATG AAAACCGCTT GCTGTTTGAC CTTCAGCGCC AGGTAGCAGA TCTTCTGGGT TATGAAGATG CCACACAGCT TGGAGTGGAG CAGATGATGA AACGCTACTA TCGCACCGTA AGGCGTGTGA TGGAGCTGAA CCAGATGCTA CTCCAGCTTT TTAAACGTGC CACACTGGGT CATACTAAAG CGCTGGAAAT AAAAGGGATC AACGACGACT TTCAACTGCG TGGTAAGTTT ATAGAAAGTA TCACAGAAAA CCTTTTTGAC GACCCGGTCC AGCTGATGAC GCTGTTTCTC CATGCGGCAA AAAACTCCAA TATTCAGGGT ATTTATGCCC CGACTTTGAG AAGCTTGAGG AAGGCCCGAC GTGCCCAGAC GCAAGCATTG TTGAACCTTC CAGCATGCAG AGCTGTCTTC TCAGAGATAT TGCGCCATCC CAGAGGCATC GCCGCCTTGT CCTTAATGCA CCGACATGGT GTTTTATCTT CATATCTACC CGCCTGGCGA GATATTGAGG GGCAGATGCA ATTCGATCTT TTTCACGCTT ATACGGTCGA TGAGCATACC CATAGACTCC TGCAAAATAT TGAAAGCTTC GCTCAAACTG ATCAAAAAGA GGAGTTTCCG TTAGGCTCCG TACTCATCAA CCAATTACCC AAAAAAGGCC TGCTCGTGCT GGCGGCGCTG TTTCACGACA TTGGGAAGGG ACGTGGCGGC GACCATAGTA AACTAGGGGC TGTTGATGCA CTCGATTTCT GTAAGCTCCA TGGGCTCAAC GATCACGATG GTCGGATGGT TGCGTGGTTA GTAGAAAATC ACTTGGTAAT GTCTGTCACC GCGCAAAGAC GCGATATTTC CGATCCCGAT GTGGTCGCCG ACTTTGCTGA TAAAGTCAGA GATTCGGTAC ACCTGAGTTA CCTTTACTGC TTAACCGTTG CCGATATCTG TGCCACCAAT GAAAAGACCT GGAACAGTTG GAAAGGCTCT TTACTTCGAG ATCTTTATTT CTCCACACAA CGCGTGTTGG CCCGAGGCAA AGAGAAGCCT GTCGATATTC GCGCTCGAGT CAGGGAGCAT CAGGCAAAGG CAAAAAAAGA GCTGCTCAGA CGTGGCGTGA AAGAGAAAAG CCTGGATGTA TTATGGCAGC GATTTAAAGC CGATTATTTT TTACGCCATC AGCCTAATCA GATAGCCTGG CATGCAGAAG CCATACTTAA ACATAAACAA GATGAACCTC TGGTCCTTAT CTCTAAGCAC ACGACCAGAG GTGGCACAGA GCTGTTCATC TATGGAAAAG ATAAACCTAA GCTATTCACG ACCGTTATGG CCGTGTTAGA CAACAAAAAC ATCAATGTTC ACGAAGCCGG TATCATGGCC TCTAAAGATC AATATGTGCT AGATTCTTTT GTCATTTTAG AGCAGGATGG AAGCCCTGTA TCGCGGGTGT CACGAATTCA GGCACTCAGA AAAACACTAA TTAAAGCGCT AAACAGTGAC ACATCTAAGC TGCCAAAATT TAAGAAGCTT TCACGGAAAA TGAAACCTTT TAGGGTGCGA ACTCAGGTAA ATTTCTTGCC CTCTCGGCGC CATGGCACCA GCATGATGGA ACTTATTGCA CTCGATAGTC CGGGACTCTT GGCAAAAGTT GGGGATATTC TTTATCGATG CCAACTCAAA TTGTTGGCAG CAAAAATAAC GACTATTGGC GAGCGAGCAG AAGATTTTTT TATTCTGCAA AATACCGAGG GTGAGCAGCT GAATGAAATT CAACAAGAGA TGTTGAGACA GAACTTAATC ACTGCACTCA CAAAGCCTGC TCAATATTAG
|
Protein sequence | MTTESAQLAK AQLLSQNHDL LTRFRHEESI KNLVAQRCQF VDELLQQQWQ EQQLDQFPIA LIAVGGYGRA ELHPQSDVDL LFLIETELSP EAEQALSRYI AFLWDAGLEV GHSVRSLAQT LEQGRNDITI ATNLLEARLL CGPQTLYHSL HLSIRADDFW PASDFYIAKR DEQIARHAKA SAFDLEPNIK TCPGGLRDIH TISWVAMRYF DAANIEALVG HGFLESDELN ELLECQSFLW ELRFALHLIS GRDENRLLFD LQRQVADLLG YEDATQLGVE QMMKRYYRTV RRVMELNQML LQLFKRATLG HTKALEIKGI NDDFQLRGKF IESITENLFD DPVQLMTLFL HAAKNSNIQG IYAPTLRSLR KARRAQTQAL LNLPACRAVF SEILRHPRGI AALSLMHRHG VLSSYLPAWR DIEGQMQFDL FHAYTVDEHT HRLLQNIESF AQTDQKEEFP LGSVLINQLP KKGLLVLAAL FHDIGKGRGG DHSKLGAVDA LDFCKLHGLN DHDGRMVAWL VENHLVMSVT AQRRDISDPD VVADFADKVR DSVHLSYLYC LTVADICATN EKTWNSWKGS LLRDLYFSTQ RVLARGKEKP VDIRARVREH QAKAKKELLR RGVKEKSLDV LWQRFKADYF LRHQPNQIAW HAEAILKHKQ DEPLVLISKH TTRGGTELFI YGKDKPKLFT TVMAVLDNKN INVHEAGIMA SKDQYVLDSF VILEQDGSPV SRVSRIQALR KTLIKALNSD TSKLPKFKKL SRKMKPFRVR TQVNFLPSRR HGTSMMELIA LDSPGLLAKV GDILYRCQLK LLAAKITTIG ERAEDFFILQ NTEGEQLNEI QQEMLRQNLI TALTKPAQY
|
| |