| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3163 |
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| Symbol | |
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| ID | 5610748 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3819755 |
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| End bp | 3822334 |
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| Gene Length | 2580 bp |
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| Protein Length | 859 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934101 |
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| Product | PII uridylyl-transferase |
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| Protein accession | YP_001474895 |
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| Protein GI | 157376295 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG2844] UTP:GlnB (protein PII) uridylyltransferase |
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| TIGRFAM ID | [TIGR01693] [Protein-PII] uridylyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.258503 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.795531 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCACGG AATCAGCTCA ACTCGCCAAA GCTCAGCTAC TCTCACAAAA CCACGACCTC
CTCACCCGCT TTCGTCATGA GGAGTCGATC AAAAACTTAG TCGCACAACG ATGCCAATTC
GTCGATGAAT TATTACAGCA ACAGTGGCAA GAGCAGCAGT TAGATCAATT TCCCATCGCG
CTCATTGCCG TTGGAGGTTA TGGCCGCGCC GAGCTGCACC CCCAGTCCGA TGTCGACCTT
CTTTTCCTGA TCGAGACAGA ACTATCCCCC GAAGCCGAAC AGGCATTAAG TCGGTATATC
GCTTTTTTAT GGGATGCTGG TCTGGAGGTC GGTCACAGTG TTCGCAGTCT GGCTCAAACC
CTTGAGCAAG GGCGAAATGA CATCACCATA GCCACTAATC TTCTCGAAGC AAGATTGCTT
TGTGGTCCCC AGACACTTTA TCATTCTTTA CACCTGAGTA TCAGAGCCGA TGATTTTTGG
CCCGCAAGTG ATTTTTACAT CGCCAAACGT GACGAACAGA TCGCACGCCA TGCTAAGGCA
AGCGCATTCG ATCTTGAGCC TAATATCAAG ACCTGTCCTG GCGGTTTAAG AGACATCCAT
ACCATCTCCT GGGTTGCTAT GCGCTACTTT GATGCTGCCA ACATTGAAGC GCTCGTCGGC
CATGGGTTTC TCGAGTCCGA TGAGCTCAAT GAACTGCTCG AGTGCCAGTC CTTCTTATGG
GAATTAAGGT TCGCGCTTCA TTTGATCTCC GGACGGGATG AAAACCGCTT GCTGTTTGAC
CTTCAGCGCC AGGTAGCAGA TCTTCTGGGT TATGAAGATG CCACACAGCT TGGAGTGGAG
CAGATGATGA AACGCTACTA TCGCACCGTA AGGCGTGTGA TGGAGCTGAA CCAGATGCTA
CTCCAGCTTT TTAAACGTGC CACACTGGGT CATACTAAAG CGCTGGAAAT AAAAGGGATC
AACGACGACT TTCAACTGCG TGGTAAGTTT ATAGAAAGTA TCACAGAAAA CCTTTTTGAC
GACCCGGTCC AGCTGATGAC GCTGTTTCTC CATGCGGCAA AAAACTCCAA TATTCAGGGT
ATTTATGCCC CGACTTTGAG AAGCTTGAGG AAGGCCCGAC GTGCCCAGAC GCAAGCATTG
TTGAACCTTC CAGCATGCAG AGCTGTCTTC TCAGAGATAT TGCGCCATCC CAGAGGCATC
GCCGCCTTGT CCTTAATGCA CCGACATGGT GTTTTATCTT CATATCTACC CGCCTGGCGA
GATATTGAGG GGCAGATGCA ATTCGATCTT TTTCACGCTT ATACGGTCGA TGAGCATACC
CATAGACTCC TGCAAAATAT TGAAAGCTTC GCTCAAACTG ATCAAAAAGA GGAGTTTCCG
TTAGGCTCCG TACTCATCAA CCAATTACCC AAAAAAGGCC TGCTCGTGCT GGCGGCGCTG
TTTCACGACA TTGGGAAGGG ACGTGGCGGC GACCATAGTA AACTAGGGGC TGTTGATGCA
CTCGATTTCT GTAAGCTCCA TGGGCTCAAC GATCACGATG GTCGGATGGT TGCGTGGTTA
GTAGAAAATC ACTTGGTAAT GTCTGTCACC GCGCAAAGAC GCGATATTTC CGATCCCGAT
GTGGTCGCCG ACTTTGCTGA TAAAGTCAGA GATTCGGTAC ACCTGAGTTA CCTTTACTGC
TTAACCGTTG CCGATATCTG TGCCACCAAT GAAAAGACCT GGAACAGTTG GAAAGGCTCT
TTACTTCGAG ATCTTTATTT CTCCACACAA CGCGTGTTGG CCCGAGGCAA AGAGAAGCCT
GTCGATATTC GCGCTCGAGT CAGGGAGCAT CAGGCAAAGG CAAAAAAAGA GCTGCTCAGA
CGTGGCGTGA AAGAGAAAAG CCTGGATGTA TTATGGCAGC GATTTAAAGC CGATTATTTT
TTACGCCATC AGCCTAATCA GATAGCCTGG CATGCAGAAG CCATACTTAA ACATAAACAA
GATGAACCTC TGGTCCTTAT CTCTAAGCAC ACGACCAGAG GTGGCACAGA GCTGTTCATC
TATGGAAAAG ATAAACCTAA GCTATTCACG ACCGTTATGG CCGTGTTAGA CAACAAAAAC
ATCAATGTTC ACGAAGCCGG TATCATGGCC TCTAAAGATC AATATGTGCT AGATTCTTTT
GTCATTTTAG AGCAGGATGG AAGCCCTGTA TCGCGGGTGT CACGAATTCA GGCACTCAGA
AAAACACTAA TTAAAGCGCT AAACAGTGAC ACATCTAAGC TGCCAAAATT TAAGAAGCTT
TCACGGAAAA TGAAACCTTT TAGGGTGCGA ACTCAGGTAA ATTTCTTGCC CTCTCGGCGC
CATGGCACCA GCATGATGGA ACTTATTGCA CTCGATAGTC CGGGACTCTT GGCAAAAGTT
GGGGATATTC TTTATCGATG CCAACTCAAA TTGTTGGCAG CAAAAATAAC GACTATTGGC
GAGCGAGCAG AAGATTTTTT TATTCTGCAA AATACCGAGG GTGAGCAGCT GAATGAAATT
CAACAAGAGA TGTTGAGACA GAACTTAATC ACTGCACTCA CAAAGCCTGC TCAATATTAG
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| Protein sequence | MTTESAQLAK AQLLSQNHDL LTRFRHEESI KNLVAQRCQF VDELLQQQWQ EQQLDQFPIA
LIAVGGYGRA ELHPQSDVDL LFLIETELSP EAEQALSRYI AFLWDAGLEV GHSVRSLAQT
LEQGRNDITI ATNLLEARLL CGPQTLYHSL HLSIRADDFW PASDFYIAKR DEQIARHAKA
SAFDLEPNIK TCPGGLRDIH TISWVAMRYF DAANIEALVG HGFLESDELN ELLECQSFLW
ELRFALHLIS GRDENRLLFD LQRQVADLLG YEDATQLGVE QMMKRYYRTV RRVMELNQML
LQLFKRATLG HTKALEIKGI NDDFQLRGKF IESITENLFD DPVQLMTLFL HAAKNSNIQG
IYAPTLRSLR KARRAQTQAL LNLPACRAVF SEILRHPRGI AALSLMHRHG VLSSYLPAWR
DIEGQMQFDL FHAYTVDEHT HRLLQNIESF AQTDQKEEFP LGSVLINQLP KKGLLVLAAL
FHDIGKGRGG DHSKLGAVDA LDFCKLHGLN DHDGRMVAWL VENHLVMSVT AQRRDISDPD
VVADFADKVR DSVHLSYLYC LTVADICATN EKTWNSWKGS LLRDLYFSTQ RVLARGKEKP
VDIRARVREH QAKAKKELLR RGVKEKSLDV LWQRFKADYF LRHQPNQIAW HAEAILKHKQ
DEPLVLISKH TTRGGTELFI YGKDKPKLFT TVMAVLDNKN INVHEAGIMA SKDQYVLDSF
VILEQDGSPV SRVSRIQALR KTLIKALNSD TSKLPKFKKL SRKMKPFRVR TQVNFLPSRR
HGTSMMELIA LDSPGLLAKV GDILYRCQLK LLAAKITTIG ERAEDFFILQ NTEGEQLNEI
QQEMLRQNLI TALTKPAQY
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