Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3162 |
Symbol | |
ID | 5610747 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 3818881 |
End bp | 3819678 |
Gene Length | 798 bp |
Protein Length | 265 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640934100 |
Product | methionine aminopeptidase |
Protein accession | YP_001474894 |
Protein GI | 157376294 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0024] Methionine aminopeptidase |
TIGRFAM ID | [TIGR00500] methionine aminopeptidase, type I |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00027219 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.447345 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTATAG TGATAAAGAG TGCAGAAGAG ATCGAGAAAA TGCGTGCAGC CGGAAAATTA GCGGCTGACG TTTTAGAGAT GGTGGCGCCT TTTGTTAAAG TGGGTGTTAC GACAGATGAG CTAAACGATA TCTGCGCTAA ATTTACAGAA GAACATGGCG CAACCTCAGC ACCTCTCGAC TATCACGGTT TTCCAAAGTC TATCTGTACT TCAATCAATG AAGTGATCTG CCATGGGATC CCAAGTTCAC GCGCTTTAAA AGATGGCGAT ATTATTAATA TCGATATCAC GGTCATCAAA GATGGTTACC ACGGTGACAC TTCGAAGATG TTTTTGATTG GTGATGTCAG CGCTAAAGAT ACGCGTCTTT GCCGCATCGC TCAAGAGAGC CTCTATGCCA GCATCCGTAA AGTTCGTCCG GGTATGAAAC TAGGCGAAAT AGGTACCATA GTTGAGAAAT TTATTAAGAC TAAGAAAACT GGCCTCGAGA AATACAGCAT TGTAAAAGAT TATTGTGGTC ATGGTATTGG TGCTGGTTTC CACGAAGAGC CTCAAGTCAT GCATTATAAA AACAGCGACA AAACCGTCTT GCGCCCGGGC ATGTGCTTCA CTATCGAGCC AATGATCAAT GCCGGTCGCC ATACTTGCAT TCTCGATAAA GATGATAACT GGACAGTAAC GACCTCAGAT GGTAAAAAAT CAGCTCAATG GGAACACACA CTGCTGATCA CTAAAACCGG AGTCGAAGTA CTTACTCTTC GTGAAGAAGA GGACTTTCCA AGAGTGATTA ATCACTAG
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Protein sequence | MSIVIKSAEE IEKMRAAGKL AADVLEMVAP FVKVGVTTDE LNDICAKFTE EHGATSAPLD YHGFPKSICT SINEVICHGI PSSRALKDGD IINIDITVIK DGYHGDTSKM FLIGDVSAKD TRLCRIAQES LYASIRKVRP GMKLGEIGTI VEKFIKTKKT GLEKYSIVKD YCGHGIGAGF HEEPQVMHYK NSDKTVLRPG MCFTIEPMIN AGRHTCILDK DDNWTVTTSD GKKSAQWEHT LLITKTGVEV LTLREEEDFP RVINH
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