| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3158 |
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| Symbol | frr |
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| ID | 5610303 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3815358 |
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| End bp | 3815915 |
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| Gene Length | 558 bp |
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| Protein Length | 185 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640934096 |
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| Product | ribosome recycling factor |
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| Protein accession | YP_001474890 |
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| Protein GI | 157376290 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0233] Ribosome recycling factor |
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| TIGRFAM ID | [TIGR00496] ribosome recycling factor |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000691666 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.144971 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGATAAACG AAATTAAAAA TGATGCAAAA TCACGCATGG AAAAGTGCGT TGAATCCACT
AAGACCCAAA TGGCTAAAGT TCGTACTGGC CGTGCACACC CTAGTCTATT AGATACAATT
AAAGTCTCTT ATTACGGTTC AATGACACCG CTTAAGCAAG TCGGCAATGT ATCGATTGAA
GATTCACGAA CTCTTGCTGT CAATGTTTTC GACAGTACGA TGATCCAAGC CGTTGAAAAG
GCAATTATGA GTTCTGACTT AGGACTTAAT CCTATGTCTG CCGGTGCAAC TATCCGTATT
CCACTTCCGG CATTAACGGA AGAGCGTCGT AAAGATCTGA TTAAAGTAGT ACGCGCCGAA
GCTGAAAATG GTCGTATAGC AGTGCGTAAC GTTCGCCGTG ACGCTAACTC AGACGTTAAA
TCTCTTGAAA AAGAGAAAGA GTGTACTGAA GATGATGTTC GTCGTACTGA AGATGACGTT
CAGAAATTCA CCGATGCTCA CATCAAGCTG ATCGATGAAA TATTGACTGC AAAAGAAGCA
GAGTTGATGG AAGTCTAA
|
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| Protein sequence | MINEIKNDAK SRMEKCVEST KTQMAKVRTG RAHPSLLDTI KVSYYGSMTP LKQVGNVSIE
DSRTLAVNVF DSTMIQAVEK AIMSSDLGLN PMSAGATIRI PLPALTEERR KDLIKVVRAE
AENGRIAVRN VRRDANSDVK SLEKEKECTE DDVRRTEDDV QKFTDAHIKL IDEILTAKEA
ELMEV
|
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