| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3157 |
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| Symbol | |
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| ID | 5610116 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3814483 |
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| End bp | 3815277 |
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| Gene Length | 795 bp |
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| Protein Length | 264 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934095 |
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| Product | di-trans, poly-cis-decaprenylcistransferase |
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| Protein accession | YP_001474889 |
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| Protein GI | 157376289 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0020] Undecaprenyl pyrophosphate synthase |
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| TIGRFAM ID | [TIGR00055] undecaprenyl diphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0130117 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0586851 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCAATCG ACTCCCAATC TAGTTCAGAA TTCACTCCTG AGGAGGTCGC TGAACTTGTG
AAACTGTCAA CTCCCAAGCA CGTAGCCATC ATCATGGATG GAAACGGACG TTGGGCACAG
GCACAAGGGA AACCCAGAGT GATGGGGCAC CGAGCCGGTG TAAAGGCAGT TCGTCGTGTC
GTTAGCACTG CCAGAGAGAT GGGAATAGAC TCACTGACAC TGTTTGCCTT CTCGAGCGAA
AATTGGCGTA GACCCGATAA AGAGGTCACG CTGTTGATGG AACTGTTTTT TACTGTTCTA
CAGCGCGAGA TTAAGTTACT GCATAAAAAT GGTGTAAGGC TAAATATCAT AGGGGATATT
AGTCGTTTCC CAGAGCGTTT ACAGAAACAG ATCGCATCGG CTGAGGCGAA AACTGCCGAT
AACTCTGAGT TAATTCTTAA CGTTGCGGCT AACTATGGAG GCCGTTGGGA TATCATGCAG
GCGGCTCAAA CTTTAGCTAA AAAGGTCGAG TCTGGTGAAA TGAACAGCAG TCAGTTCACC
GAAGAGGCGC TAAATGAACA TTTATGCATG CAAAATCAGC CTGAAGTTGA TTTAATGATC
CGCACTGGCG GTGATTTCCG TATCAGTAAT TTCATTTTAT GGCAGGCTGC CTATGCCGAG
TTGGTATTTA CCGATACTTT ATGGCCGGAC TTTGATGAAA ATGCATTCAG GCAGACGGTA
GCCATTTTTG CATCTCGTCA GCGCCGTTTT GGCTTAACGG GATGCCAGAT CGAATCTATG
CAGGCTCAGA AATAA
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| Protein sequence | MSIDSQSSSE FTPEEVAELV KLSTPKHVAI IMDGNGRWAQ AQGKPRVMGH RAGVKAVRRV
VSTAREMGID SLTLFAFSSE NWRRPDKEVT LLMELFFTVL QREIKLLHKN GVRLNIIGDI
SRFPERLQKQ IASAEAKTAD NSELILNVAA NYGGRWDIMQ AAQTLAKKVE SGEMNSSQFT
EEALNEHLCM QNQPEVDLMI RTGGDFRISN FILWQAAYAE LVFTDTLWPD FDENAFRQTV
AIFASRQRRF GLTGCQIESM QAQK
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