| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3155 |
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| Symbol | |
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| ID | 5610114 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3812416 |
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| End bp | 3813603 |
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| Gene Length | 1188 bp |
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| Protein Length | 395 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934093 |
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| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| Protein accession | YP_001474887 |
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| Protein GI | 157376287 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0352307 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0314358 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGAGAA TGGTAATTTT AGGTGCGACA GGTTCTATTG GCTCTAGTAC GTTAAGTGTC
ATAGAAAGCA ATCCTGATGC CTACAGTGTG TATGCTTTGG TCGCTAATAC CAGTGTCGAA
AAGATGCTCG CTCTGTGTGA GACACATCGC CCTCAAATTG CTCATATGGT CGATGGGCAA
GCGGCTAAAT CACTCAAGCA AAGATTACCT ACAAGTCTGA ATGTTGAAAT CACCACTGGC
GAAGATCAAC TGATTGATAT TGTCAGTGCA AGTTGTGTAG ACAGTGTGAT GGCTGCGATT
GTGGGCGCAG CGGGTCTGGT GCCAACATTA GCGGCGGTTA AAGCCGGCAA ACGTGTATTG
CTTGCCAATA AAGAATCATT AGTCATGTCT GGTCGACTCT TTATTGATGA GATGAGGCGA
TCGGGTGCTC GGGTTCTTCC CGTCGATAGT GAACACAATG CGATTTATCA GGCTCTTCCT
GAGTCTCTGC AGAGCAACAT AGGTTACTGT GAACTGGAAA AAGCAGGCGT TTCTCATATT
CTCCTCACTG GATCCGGTGG TCCGTTTTTA ACCTCTGAGC TTGCTTCTCT GGCCTCAATG
ACTCCTGCAC AGGCTTGTAA ACATCCTAAT TGGTCGATGG GGCGTAAGAT CTCTGTCGAT
TCAGCGACCA TGATGAACAA GGGATTAGAG TATATAGAGG CGCGTTGGTT GTTTAATGCA
GCCGATGATC AGCTTAAAGT CGTTATTCAC CCACAGAGTG TTATTCACTC TATGGTGCAG
TATTTAGATG GCTCTGTTTT AGCTCAGCTT GGTAATCCCG ATATGCGCAC GCCTATCGCT
CACTGCATGG CTTACCCGCA AAGAATTCAA TCCGGAGTTG AACCTTTAGA CTTTTTCAAA
GTCGGACAGT TAAGCTTCTC AGAACCCGAT TTCAATCGTT TCCCCTGTTT AGCATTGGCT
ATGGAAGCTT GCAAGCAGGG GCAAGAAGCG ACGACGGTTG TCAATGCCGC CAACGAAATA
TCGGTTCAGG CATTTTTAGA AAACAAGATT AAGTTTACCG ATATTGCTAA AGTAAACGAA
GCCTGCTTAA GTCAGGTTGC ACCGCAGTCG TTGAACAGTA TTGAAGATAT TATTCGGTTA
GACCTTCAAT CGCGCACCTA TGCTGCAGAA TGGGTTAAGA AAATTTAA
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| Protein sequence | MQRMVILGAT GSIGSSTLSV IESNPDAYSV YALVANTSVE KMLALCETHR PQIAHMVDGQ
AAKSLKQRLP TSLNVEITTG EDQLIDIVSA SCVDSVMAAI VGAAGLVPTL AAVKAGKRVL
LANKESLVMS GRLFIDEMRR SGARVLPVDS EHNAIYQALP ESLQSNIGYC ELEKAGVSHI
LLTGSGGPFL TSELASLASM TPAQACKHPN WSMGRKISVD SATMMNKGLE YIEARWLFNA
ADDQLKVVIH PQSVIHSMVQ YLDGSVLAQL GNPDMRTPIA HCMAYPQRIQ SGVEPLDFFK
VGQLSFSEPD FNRFPCLALA MEACKQGQEA TTVVNAANEI SVQAFLENKI KFTDIAKVNE
ACLSQVAPQS LNSIEDIIRL DLQSRTYAAE WVKKI
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