| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3153 |
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| Symbol | |
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| ID | 5610201 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3808498 |
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| End bp | 3810981 |
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| Gene Length | 2484 bp |
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| Protein Length | 827 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934091 |
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| Product | surface antigen (D15) |
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| Protein accession | YP_001474885 |
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| Protein GI | 157376285 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4775] Outer membrane protein/protective antigen OMA87 |
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| TIGRFAM ID | [TIGR03303] outer membrane protein assembly complex, YaeT protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000352533 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0112151 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGATTTA ATAAACTTTT TGCCTCGATG GTATTAGTCG GTGCGTCTTT ATCAGGGAAC
GGTTGGGCAG AAACATTCCA ACCTTTTGAA GTAACCGATA TACAAGTGCA AGGGTTACAG
CGTGTAGCTC TTGGTGCCGC GCTACTGACC ATTCCAGTTA AGGTCGGTGA TACGGTTGAT
CAAGTTAAAC TCCAACAAGC AATTAAGAGC TTGTATGCCT CGACTAACTT CGAACATATC
GAAGTGAGTC GTGATGGCGG TGTATTGGTG GTCACGGTCA AAGAGAGACC GACAATCAGT
ACCGTGACAT TTGAAGGCAA CAAAGATATC AAAGATGAAC AGCTTCAGGA GAGTCTGGAT
GGCTCCGGGG TCAAGGTCGG TGAGTCATTA GACCGTACCA TGTTATCGGG TATCGAGAAG
AGTCTTCAGG ATTTCTATTA TGGTGTGGGT AAATACGGAG CTAAAGTTGA AGCTCAGGTT
ATTAACTTGC CTCGTAATCG TGTAGAGCTA AAGTTCAACT TTACTGAAGG GTTAGCCGCA
GAGATCAAAC AGATCAACGT CGTTGGTAAT GAAGTCTTCT CCGATGCTGA ACTTATCGGC
ATGCTGGAAC TAAAAGACTA TGTCGCCTGG TGGGATCTGT TCGGTGAGCG CCGCTATCAG
AAACAGAAAC TTCAAGCCGA TCTCGAGACG GTAAAATCTT TCTACCATAA CCGAGGTTAT
ATTCGCTTCG ATGTCACCTC GACACAAGTT GCGATGACGC CTGACCGTAA GGGTCTCTAT
ATCACTATCA ATGTCGATGA GGGCGAGCAG TATAAGGTTA CAGAAGTTAA CCTGACTGGC
GACCTGATGG GGCGTGAGAA AGTGATGAAG GGTATTCTTC CTATTAAAGA GGGAGACATG
TATAACGGTG CCGATGTGAC ATTTGCCGAA GAGATGTATG GCAAGTATCT GGGCCGTTTC
GGTTATGCCT ACCCGGAAGT TAAGACCTAC CCGGAAATTA ATGATGAGAC TAAAGAAGTT
ACTCTTAACG TTAATATTCA ACCGGGTAAA CGCGTCTATG TACGTAATAT CAACTTTTCC
GGTAACCAGG TCACCAAAGA CGAAGTAATG CGTCGTGAGC TTCGTCAGAT GGAAGGTGCG
TGGTTAAACT CGGCACAGGT TGAGCAATCT AAAGCCCGCC TGAACCGTTT AGGTTATTTT
GAAACCGTAG ATACCGAAAC GGTTCAAGTA CCAGGTACCG ATGATCTGGT CGATGTTGCC
TTCAATGTAA AAGAGCAGCC ATCGGGTTCA TTTAATGCCG GTGTCGGTTA TGGTACTGAA
TCAGGGTTGA GTCTGCAGTT TGGTGTTCAG CAGAGTAACT TCTTAGGTAC GGGTAACCAA
GCGGGTATTA ACCTAAATAC TAACAAGTAT TCAAAGAACG TGAATGTCTC TTATACCGAC
CCATACTTTA CCAAAGATGG TGTTAGTTTA GGTGGTAGTA TTTACTGGAA CGAGTTTGAC
GCGCATGAGG CCAACCTCGA GCGTTATAAG AACAGCTCTT ATGGTATTGC GCTTAACTCT
GGTTTCCCTA TCAACGAAAC CAATCGAATT AACGGTGGTA TTGGCTATCG TCATAACTCG
ATCTCTGAGA TCTCGGCTTA TGAGCAGGCG CTGCGCTTCT ATAATATCTA CCGTGACTCA
GACGATCCGA ATGCCGACCT GGCCTTCAAT AACTTCGAGG CTAACTTAGG TTGGTACCGT
AGTACGCTTA ACCGGGGTAC CTTCCCATCA GATGGTTCAT CTCAGCGCTT GAGCACTAAG
GCGACGATAC CGGGTTCAGA TCTGCAATAC TTTAAGGCAG ATTTTGATAC CAGCTTCTAC
TTCCCAATCA ACCGTAGTCA CAGCTTTGTT ATGTTGACTA AGGCTCGTGT TGGTTACGGT
AATGGTTATG GTCAGTTTAA CGATAACGAT CAGATATTAC CTTTCTGGGA AAACTATTAC
TCAGGTGGTA GTAGTTCCTT ACGTGGCTTC AAGTCTAACT CTGTAGGCCC ACGTTCATTC
TACCTGTATC GAGGTAGTGA GCCATGTTCT CCGGATCCTT CGGGTTCGGG CTGTTATCTA
CCGGGCGATC CAAACCAAAT TCAGGTCAGC GATGGTCGCT CAATTGGTGG TAATGCGATT
GCAACAGCCA GCATAGAGAT GATTGTGCCA ACGCCATTTT TGGATGAGGC TTATACCAAT
TCAGTACGTA CCAGTTTCTT CGTCGATGCC GGTAACGTAT GGGATACCGA GTTTGATTAT
GACTCATACC GTTATCTTCC TGCACACGAG TTTGATAAGC TTGAAGATTA TGCCGACCCG
AGCCGGATCC GCGCATCTGC GGGTATGAGC GTACAGTGGC TGTCACCGAT GGGACCTATG
GTGTTTAGTC TTGCTTGGCC AATTAAGGAA TACGAGGATG ATGAGACTGA GATCTTCTCG
TTCAATATTG GCAAAACTTT CTAA
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| Protein sequence | MRFNKLFASM VLVGASLSGN GWAETFQPFE VTDIQVQGLQ RVALGAALLT IPVKVGDTVD
QVKLQQAIKS LYASTNFEHI EVSRDGGVLV VTVKERPTIS TVTFEGNKDI KDEQLQESLD
GSGVKVGESL DRTMLSGIEK SLQDFYYGVG KYGAKVEAQV INLPRNRVEL KFNFTEGLAA
EIKQINVVGN EVFSDAELIG MLELKDYVAW WDLFGERRYQ KQKLQADLET VKSFYHNRGY
IRFDVTSTQV AMTPDRKGLY ITINVDEGEQ YKVTEVNLTG DLMGREKVMK GILPIKEGDM
YNGADVTFAE EMYGKYLGRF GYAYPEVKTY PEINDETKEV TLNVNIQPGK RVYVRNINFS
GNQVTKDEVM RRELRQMEGA WLNSAQVEQS KARLNRLGYF ETVDTETVQV PGTDDLVDVA
FNVKEQPSGS FNAGVGYGTE SGLSLQFGVQ QSNFLGTGNQ AGINLNTNKY SKNVNVSYTD
PYFTKDGVSL GGSIYWNEFD AHEANLERYK NSSYGIALNS GFPINETNRI NGGIGYRHNS
ISEISAYEQA LRFYNIYRDS DDPNADLAFN NFEANLGWYR STLNRGTFPS DGSSQRLSTK
ATIPGSDLQY FKADFDTSFY FPINRSHSFV MLTKARVGYG NGYGQFNDND QILPFWENYY
SGGSSSLRGF KSNSVGPRSF YLYRGSEPCS PDPSGSGCYL PGDPNQIQVS DGRSIGGNAI
ATASIEMIVP TPFLDEAYTN SVRTSFFVDA GNVWDTEFDY DSYRYLPAHE FDKLEDYADP
SRIRASAGMS VQWLSPMGPM VFSLAWPIKE YEDDETEIFS FNIGKTF
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