Gene Ssed_3151 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3151 
SymbollpxD 
ID5610199 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand- 
Start bp3806889 
End bp3807914 
Gene Length1026 bp 
Protein Length341 aa 
Translation table11 
GC content48% 
IMG OID640934089 
ProductUDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 
Protein accessionYP_001474883 
Protein GI157376283 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1044] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 
TIGRFAM ID[TIGR01853] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 


Plasmid Coverage information

Num covering plasmid clones0 
Plasmid unclonability p-value0.000000238137 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.02646 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAGCT ACACCATAAA AGAGTTGGCT CAGAAGCTTG GCGGTGATAT TCAAGGTGAT 
GAGACTCTGG TTATTTCCAG TGTTGCTACC TTGGAGAATG CCGGAGCAGG CCAACTCTCT 
TTTTTAGCCA ATTCAAAATA TCGTGCCCAA TTGGAATCAA CCCAAGCGAG TGCGGTGTTG 
ATCTCTCCTA AAGAGATTGA TGGTTATTCC GGTAACGCGA TCATTTTAAG CGATCCTTAT 
GTTGGTTTTG CCCGTGTATC TCAGTTATTA GATACCACGC CAAAGGCTGC ACAAGGCATT 
CACCCATCTG CAATTATTCA TCCGACTGCT AAGCTGGGTG AAGATGTTGC AGTGGGTCCA 
AATGCTGTTA TCGGTGAAAA CGTCATCCTT GGTGAGCGGG TACAAGTTGG CGCCGGCTCG 
GTGGTTGGCC AAGACTGTAT CTTAGGCTCA GGCACACGTC TGTGGGCTAA TGTCACTATT 
TACCATGATG TTCACCTTGG TCAGGACTGC ATTATCCATT CAGGTGCCGT GATTGGTTCC 
GATGGCTTTG GTTATGCCAA TGAACGCGGT CAATGGATTA AAATTCCACA GACCGGGGGC 
GTTAGGGTGG GTGATCGAGT TGAAATCGGT GCCAGTACTA CGGTCGACCG TGGTGCGATT 
GAGCACACTG AGATCCATGA CGGTGTGATA CTCGATAATC AGGTTCAGAT TGCTCATAAC 
GATATTATCG GTGAAAATAC CGCCATTGCC GGCAACTCTA CCATTGCGGG AAGCACCCGG 
ATAGGTAAGT ACTGTATCAT AGGTGGAAAC AGTGCAGTAG CGGGCCATCT GAGCGTAGCC 
GATGGCACCC ATATCTCAGG TGCGACCAAT GTCACCAGTA TTATTCGTGA GCGTGGTGTC 
TATAGCTCAG CCACTATCGC CATGGACAAT AAATTATGGC GCCGAAATAC GGTTCGTTTC 
AGACAACTGG ATGAGCTTTT TCAGCGTGTT AAAAAGCTTG AAAAAAGTGT ACCAACAGAA 
GATTAA
 
Protein sequence
MKSYTIKELA QKLGGDIQGD ETLVISSVAT LENAGAGQLS FLANSKYRAQ LESTQASAVL 
ISPKEIDGYS GNAIILSDPY VGFARVSQLL DTTPKAAQGI HPSAIIHPTA KLGEDVAVGP 
NAVIGENVIL GERVQVGAGS VVGQDCILGS GTRLWANVTI YHDVHLGQDC IIHSGAVIGS 
DGFGYANERG QWIKIPQTGG VRVGDRVEIG ASTTVDRGAI EHTEIHDGVI LDNQVQIAHN 
DIIGENTAIA GNSTIAGSTR IGKYCIIGGN SAVAGHLSVA DGTHISGATN VTSIIRERGV 
YSSATIAMDN KLWRRNTVRF RQLDELFQRV KKLEKSVPTE D