| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3150 |
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| Symbol | fabZ |
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| ID | 5610181 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3806398 |
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| End bp | 3806859 |
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| Gene Length | 462 bp |
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| Protein Length | 153 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640934088 |
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| Product | (3R)-hydroxymyristoyl-ACP dehydratase |
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| Protein accession | YP_001474882 |
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| Protein GI | 157376282 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0764] 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases |
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| TIGRFAM ID | [TIGR01750] beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000530867 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0214568 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGTCAAATC AATTAAATAC CATGGATATC AAAGAAATCA TGAACTCTTT GCCCCATAGG
TACCCATTCT TATTGATCGA TCGTGTATTA GACTATACTC CGGGTGAGAC GCTTCATGCG
ATCAAGAACG TCACTATCAA TGAACCTTTC TTCCAGGGAC ATTTCCCGAT CCAACCAGTG
ATGCCTGGCG TATTAATTCT GGAAGCGATG GCGCAGGCAA CAGGCTTGTT AGCTTACAAG
ACAATGGAAG CTGCTGTTAC TGATGATTCC TTGTATTATT TTGCCGGTAT CGATAAGGCG
CGTTTTAAGC GAGTTGTCGA GCCAGGTGAT CAGTTACACT TTGAAGTGAA GATGGTAAAA
GAACGCCGTG GGATTGGGGT GTTTACTGGT GTAGTTAAGG TTGACGGCGA GTTAGTTTGC
TCGGCGGAAA TCATGTGTGC TCGCAGAGAG ATCAAAAAGT GA
|
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| Protein sequence | MSNQLNTMDI KEIMNSLPHR YPFLLIDRVL DYTPGETLHA IKNVTINEPF FQGHFPIQPV
MPGVLILEAM AQATGLLAYK TMEAAVTDDS LYYFAGIDKA RFKRVVEPGD QLHFEVKMVK
ERRGIGVFTG VVKVDGELVC SAEIMCARRE IKK
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