| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3141 |
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| Symbol | |
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| ID | 5611273 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3793709 |
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| End bp | 3794836 |
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| Gene Length | 1128 bp |
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| Protein Length | 375 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934079 |
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| Product | patatin |
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| Protein accession | YP_001474873 |
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| Protein GI | 157376273 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.133686 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0844879 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCCTGATA AAACAGCATT AGTTCTTGGC GGTGGTGGTG CGCGTGCGGC ATATCAGGTC
GGTGTGCTTA AAGCTATAGT ACAGTTCTAC CCCAGAAATC ATGGGATCCC ATTTAAAATC
ATCTGTGGTA CGTCAGCCGG GGCCATCAAC GGGACCTCGA TTGCGACCCA TGCTTCCTGC
TTTCACCTCG GCGTTCGAAA ACTGGAATGG GTATGGCGCA ACTTCCATAC AAGTAAAGTT
TACAGCTCCT CGGCGGCCGG TATTTTGGCC CATTTAAGCA AGATGCTACT GATGAGTATT
CAGGAAGATA GGGTCAACAC CAATGCGGGC AGCCTGTTTA ATAGCGAACC CTTGCGAGTG
CAGCTCAATC AGCTGATCAA TTTTATTCGA ATAGACAGAA ATATTGCCAG CGGTGCACTT
AATGCCCTGA GCATAGATAC TTCCTGCTAT AACACCTCAC GATCGATCAC CTTTTTTCAA
GCCAGCCGGG ATATCAAGGA GTGGCACAGG GATAGACGAA GAGGAGAGAG GACCCAGCTT
AATACAGAGC ATCTGCTGGC AAGCAGTGCC ATCCCACTCA TATTTCCTTC GATTAAGCTC
AATCAGGGTT ATTACGGAGA TGGATCGGTG CACCAGCTCG CGCCCTTGAG CAGCCCTATT
CACTTAGGGG CAAAAAAAAT CATGGTGATC AATCTGGAGA GCCCTCATAA ACAGATGCCC
CAAGAGTTAG AGCATCACCC CAAGACCGCG ACGATTACGG GCCACCTACT CGATACCATC
TTTTCAGATA CGCTTAACAG CGATCTCGAG CGGCTCGAGC GGGTCAACAA CACCCTCTCC
CTCATCCCAA AAGAGGATTG TGAGAAGCTC CCGCTGACTA ATATTGAAAC CTTAGTGATT
AAACCCAGTG AGGATCTCAG TCAATTGGCA TCCCAGTATT ATCATGAGAT GCCCTTTGCG
GTTAAGTCTA TGCTGAGACC CCTGGGGATT AAGCAACAGA CCGATTCGAG TATCGTCTCT
TACCTGCTGT TCGAAAAGGC TTACTGCAGT GCACTTATCG ATTTAGGTTA TCAGGATGCC
ATGTGTCAGA TCGATGAGAT CCGGGACTTT TTTGAGATAG ATAATTAG
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| Protein sequence | MPDKTALVLG GGGARAAYQV GVLKAIVQFY PRNHGIPFKI ICGTSAGAIN GTSIATHASC
FHLGVRKLEW VWRNFHTSKV YSSSAAGILA HLSKMLLMSI QEDRVNTNAG SLFNSEPLRV
QLNQLINFIR IDRNIASGAL NALSIDTSCY NTSRSITFFQ ASRDIKEWHR DRRRGERTQL
NTEHLLASSA IPLIFPSIKL NQGYYGDGSV HQLAPLSSPI HLGAKKIMVI NLESPHKQMP
QELEHHPKTA TITGHLLDTI FSDTLNSDLE RLERVNNTLS LIPKEDCEKL PLTNIETLVI
KPSEDLSQLA SQYYHEMPFA VKSMLRPLGI KQQTDSSIVS YLLFEKAYCS ALIDLGYQDA
MCQIDEIRDF FEIDN
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