| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3134 |
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| Symbol | |
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| ID | 5611270 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3782879 |
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| End bp | 3783952 |
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| Gene Length | 1074 bp |
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| Protein Length | 357 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934072 |
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| Product | inner-membrane translocator |
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| Protein accession | YP_001474866 |
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| Protein GI | 157376266 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.628981 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.885727 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTAGTT TGGCAATGCG TCCATGCGGG GATTTCAGGA CCAGTTACAA GAAAGACAAC
ACGATTTTCG AAACCAAGAC CATACGTTTG GTGGCCATCC TGGCCATCGC AGCCGCTTGT
CTGGCACCGC TTGTCTTGGA TGGTTACTTT TTAACCCTAT TTATTCAGAT CTCTTATCTG
GGAATAGCGG CGCTGGGACT CAATATCTTG GTGGGTTTCA CCGGACAGAT CTCCTTGGGT
CATGGTGCCT TCTTCGGCTT CGGCGCATTT GCATCGGCCT GGCTCAACAC CAGCTTTAAT
ATCCCGGTAG CCCTGTGTAT CCCTATGGCG GGTTTCCTGA CTATGGCGGT CGGCATGATG
TTTGGCATGC CTGCTGCGCG TATTAAGGGG CTTTACCTGG CGATAGCTAC ATTGGCGGCT
CAGTTTATTA TCGAAGACTT TTTTGCTCGT GCCGAGTGGT TCTCCGGTGG TTCATCGGGC
TCTATGGCGG CGCCGGTGAA CCTCCTGGGG TTCGAGTTTG ATACAGACCA AAGCTTTTAC
TATATCGCCC TGTTTGCCCT CGTCTTCATG TACATCTGGG GCTGTAACCT GATGCGCAGC
CGTGATGGTC GTGCGTTTGT GGCGGTACGC GACCACTATC TTTCGGCCGA GATCATGGGG
GTGAAGTTAA ACAAGTATCG CCTGCTGTCA TTCGGCATCT CCTCATTCTA TGCCGGGATC
GGCGGCGCGT TGTATGCGCA CTATCTTGGC TATGTTTCGG CAGAAGGGTT CACCATTTTC
ATGTCGATAC AGTTTCTGGC CATGATCATC ATCGGTGGCC TGGGGTCAAT CAAGGGAACT
CTGATGGGGG TCATCTTCAT GGTGTTACTG CCGGAGATGT TGGAGACAGG TGTCGGTCTG
ATGAAATACA CCGACTGGGG CAACATCCCT ATGGTGACCG ATGGTCTGGC TTATATCAAG
GAGATGGCGA TCGGCCTGGT CATTATCCTG TTTCTTATTT TTGAGCCAGA GGGGCTTGCC
CACCGCTGGG CGCAAATAAA GAACTATTGG AAATTCTATC CGTTCTCTTA TTAA
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| Protein sequence | MSSLAMRPCG DFRTSYKKDN TIFETKTIRL VAILAIAAAC LAPLVLDGYF LTLFIQISYL
GIAALGLNIL VGFTGQISLG HGAFFGFGAF ASAWLNTSFN IPVALCIPMA GFLTMAVGMM
FGMPAARIKG LYLAIATLAA QFIIEDFFAR AEWFSGGSSG SMAAPVNLLG FEFDTDQSFY
YIALFALVFM YIWGCNLMRS RDGRAFVAVR DHYLSAEIMG VKLNKYRLLS FGISSFYAGI
GGALYAHYLG YVSAEGFTIF MSIQFLAMII IGGLGSIKGT LMGVIFMVLL PEMLETGVGL
MKYTDWGNIP MVTDGLAYIK EMAIGLVIIL FLIFEPEGLA HRWAQIKNYW KFYPFSY
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