| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3132 |
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| Symbol | |
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| ID | 5611268 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3780533 |
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| End bp | 3781351 |
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| Gene Length | 819 bp |
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| Protein Length | 272 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934070 |
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| Product | ABC transporter-related protein |
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| Protein accession | YP_001474864 |
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| Protein GI | 157376264 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0410] ABC-type branched-chain amino acid transport systems, ATPase component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.318916 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACAAG CAGCTCAGAT CCAGCCATCG ACACCCGTGT TATCCATTAA TAATATCGAA
GTTGTCTACG ATGATGTTAT TCAGGTGCTC AGAGGCGTGA GCATTGAGGT TCCAAAGGGC
AAGATAGTCA CCCTGTTAGG ACCAAATGGC GCCGGAAAGT CCACTACGCT TAAGGCTATC
TCCGGTTTAC TGAAAACAGA AAATGGTGAT GTTACCCGTG GCGATATTAG CTTCATGGGT
CAACAGATAG ATAAAAAAAA TGCCGATGAG ATCGTTCGTT CCGGCGTATT CCAGGTCATG
GAAGGACGCC GTATCGTTGA AGATATGACG GTGATTGAAA ACCTTAAATT AGGCGCCTAT
ACCCGAAGTG ATAATCAGAT CAATCAGGAT ATCGAGATGG TATTCAGTTA TTTTCCGCGC
CTAAAGGAGC GGACGGGGCT GGCCGGATAC CTCTCTGGCG GAGAGCAGCA GATGCTGGCT
ATTGGCCGTG CCTTGATGGC ACGCCCTAAG ATGATCTGTC TCGATGAGCC CTCAATGGGG
TTATCACCTC TGTTGGTGAA GGAGGTGTTC GGGATCATAG ATAAGATCAA CAAGGAGCAG
GGGATCACTA TGCTGCTGGT GGAGCAAAAT GCCAATTATG CCCTTAAGGC TGCCGACTAC
GGATATATCA TGGAGTCCGG AAAAATCGTA TTGGACGGCA CCAGCGAGCA ACTGCTGAGT
AACGAAGATG TGAAAGAGTT CTACTTAGGT GGTGGTAACG ATAAGAGAAA AAGTTTCAAA
AATTTAAAGT CTTATAAGCG TCGTAAGCGC TGGTTGTAG
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| Protein sequence | MTQAAQIQPS TPVLSINNIE VVYDDVIQVL RGVSIEVPKG KIVTLLGPNG AGKSTTLKAI
SGLLKTENGD VTRGDISFMG QQIDKKNADE IVRSGVFQVM EGRRIVEDMT VIENLKLGAY
TRSDNQINQD IEMVFSYFPR LKERTGLAGY LSGGEQQMLA IGRALMARPK MICLDEPSMG
LSPLLVKEVF GIIDKINKEQ GITMLLVEQN ANYALKAADY GYIMESGKIV LDGTSEQLLS
NEDVKEFYLG GGNDKRKSFK NLKSYKRRKR WL
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