| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3125 |
|---|
| Symbol | xseA |
|---|
| ID | 5611251 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 3772228 |
|---|
| End bp | 3773556 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640934063 |
|---|
| Product | exodeoxyribonuclease VII large subunit |
|---|
| Protein accession | YP_001474857 |
|---|
| Protein GI | 157376257 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1570] Exonuclease VII, large subunit |
|---|
| TIGRFAM ID | [TIGR00237] exodeoxyribonuclease VII, large subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0284972 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATGC CAAAAAATAA CGTTTATACC GTATCCCGCC TGAATGGCGA AGTACGTCAA
CTACTCGAAG GTGAATTGGG AAAAATTTGG CTCAATGCCG AAATTTCAAA CTTTGCCGCC
CCCGGTTCTG GGCACTGGTA TCTGACACTC AAAGACAACT TTGCCCAGAT CCGTTCGGCC
ATGTTCAAAG GCCGAAACCG CAGTGTCACC TTTAAGCCTG TCAATGGCCA GCAGGTATTG
GTAAAAGGCT CGATTAGCGT CTACGAACCC AGAGGCGACT ACCAGCTCAT CATCGAGTCC
ATGCTTCCCG CCGGAGATGG CCTGCTCGCG CAGCAATATG AAGCGCTCAA GATGAAGCTG
GCCGCAGAAG GGCTCTTTGC GGCGGACACC AAGCGCCCAA TGCCAACAAA TATTCAAAAA
ATTGGGGTTA TCACCTCCGC GACCGGCGCG GCAATAAAAG ATGTACTCCA TGTACTGGCA
AGGCGAGACT CCAGTATCGA AGTCGTCATC TACCCGACTC AGGTCCAAGG CGATTCGGCC
TCTAAAAGCA TCTGCAAGGC CATTCAAACC GCCAACGCAA GGCAGGAGGT CGATGTACTG
CTACTGACCC GAGGTGGCGG TTCGCTGGAA GATCTCTGGT GTTTCAACAA TGAAGACCTT
GCCCATGAGA TATACAACAG CGCCCTTCCC ATCGTCTCTG CGGTTGGTCA CGAAGTCGAT
ACGACTATCA GTGACTATGT TGCCGATGTC AGAGCCCCAA CGCCGTCTGC TGGCGCTGAG
CTCCTCTCCG GGGATGCCGA GAATAAATCC GAAAAGCTCG CCACCTTCAT CGCACGACTT
AAACAGAGCT GGCAGCATTA CCAGTTGAAA ACCGAGCAGC GCAGCCGCTC GCTGGAAAAT
AGACTCCACA GACAAGATCC TAAGCGAAAA CTGGAGCAGT TTCAGCAGAG CTTCGATGAG
ATACAGATAC GCCTCAACGC CGCACTCAAC GACAAACTGC ACAAGTCGAC GCTGCAGCAG
CAGAGTTTAA GTTACAGGCT TAATCAGCAG TCCCCACAGC ACAGGTTAAC GTTAGAGTCG
AAGCACCTGG ATTATCTTAC GGCGCGCTTA AATGAGGGCA TAAAGGGGAA GCTCAACGAT
GTCGAGATGA GCCTTAAAAA CAGCGCCCAT CAACTGGAAA CCGTCAGTCC GTTGGCCACT
CTGAGTCGCG GTTACAGTAT CACCCAAGAT GAAAGCGGAA AGGTACTGCT GAGCTCCAAA
GACACTCAGG CAGGCGATAC GATCACCACA CGACTTCTCG ATGGAGAGGT GAAATCGACA
GTGATTTAG
|
|---|
| Protein sequence | MKMPKNNVYT VSRLNGEVRQ LLEGELGKIW LNAEISNFAA PGSGHWYLTL KDNFAQIRSA
MFKGRNRSVT FKPVNGQQVL VKGSISVYEP RGDYQLIIES MLPAGDGLLA QQYEALKMKL
AAEGLFAADT KRPMPTNIQK IGVITSATGA AIKDVLHVLA RRDSSIEVVI YPTQVQGDSA
SKSICKAIQT ANARQEVDVL LLTRGGGSLE DLWCFNNEDL AHEIYNSALP IVSAVGHEVD
TTISDYVADV RAPTPSAGAE LLSGDAENKS EKLATFIARL KQSWQHYQLK TEQRSRSLEN
RLHRQDPKRK LEQFQQSFDE IQIRLNAALN DKLHKSTLQQ QSLSYRLNQQ SPQHRLTLES
KHLDYLTARL NEGIKGKLND VEMSLKNSAH QLETVSPLAT LSRGYSITQD ESGKVLLSSK
DTQAGDTITT RLLDGEVKST VI
|
|---|
| |