| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3123 |
|---|
| Symbol | guaA |
|---|
| ID | 5611234 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3768930 |
|---|
| End bp | 3770507 |
|---|
| Gene Length | 1578 bp |
|---|
| Protein Length | 525 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640934061 |
|---|
| Product | GMP synthase |
|---|
| Protein accession | YP_001474855 |
|---|
| Protein GI | 157376255 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0518] GMP synthase - Glutamine amidotransferase domain
[COG0519] GMP synthase, PP-ATPase domain/subunit |
|---|
| TIGRFAM ID | [TIGR00884] GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit
[TIGR00888] GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAATA TTCATGAGCA TAAGATACTG ATCCTGGACT TTGGATCTCA GTACACTCAG
TTAATCGCCC GTCGTATCCG TGAAATCGGT GTTTATTGTG AGTTATGGGC TTGGGATGTT
TCCGAAGCAC AAATTAAAGG GTTCGCCCCT AACGGTATTA TCTTAGCCGG CGGCCCTGAA
AGCGTGACCG CCGATGAGTC ACCTCGAGCA CCTGAATATG TTTTCAATGC AGGCGTGCCT
GTATTGGGGA TCTGTTACGG CATGCAGACC ATGTCAGAGC AGCTGGGTGG TAAGGTCATT
GAAGGGATAG GTGAAGGCGA GTTCGGTTAT GCCCAAATTG AAATTCAGGA ACCCAGTGAG
TTATTCAAGA GTATCGAAGA TGCTATCAGC GAGTCTGGTA AGCCGCTACT CGATGTATGG
ATGAGCCACG GTGATAAGGT TTTAGATATT CCAGAGGGGT TCGTTACCGT CGCCAATACC
GAGACTTGTC CTCATGCCGC AATGGCCAAT GAAGATAAGA AGTTCTATGG CGTGCAGTTC
CACCCTGAAG TGACACATAC CCGTCAGGGT AAACGTATGT TGGAGCACTT CGCGCTGGAC
ATCTGTGAGT GTGAAGCTAA CTGGAAACCT ACATCGATTA TCGAAGATGC AGTTGAGCGT
TTGAAGAAAC AGATCGGCGA TGATGAGGTT ATCCTGGGTC TGTCTGGCGG CGTCGATTCA
TCGGTTGTGG CTATGTTGTT ACACCGTGCT ATCGGTGACA AGCTGACTTG CGTATTTGTC
GACAATGGCT TGCTTCGTCT TAACGAAGCT GACCAGGTGA TGGATATGTT TGGTGACCAC
TTCGGACTCA ATATTGTTCA TGTGAACGCT GAAAATCGTT TCCTAGATGC GATGAAGGGC
GAAGCCGATC CTGAAGCTAA GCGCAAAATC ATCGGTCATG TCTTCGTTGA GATCTTCGAT
GAAGAATCTA AGAAGTGCAA AAATGCTAAG TGGTTGGCGC AAGGTACCAT CTACCCAGAT
GTGATTGAAT CAGCCGGTAG TGCCACTGGT AAGGCACATG TCATTAAGTC ACATCACAAT
GTGGGTGGCT TACCCGATGA TATGGAGCTG GGTCTTGTTG AGCCACTTCG TGAGCTGTTT
AAAGATGAGG TGCGTAAGAT AGGTCTGGAA TTAGGTCTGC CTTATGACAT GCTCTACCGT
CATCCGTTCC CCGGACCGGG TCTTGGTGTC CGTGTTCTTG GTGAAGTGAA GAAAGAGTAC
TGCGATCTGC TTCGTTTAGC CGATGCCATC TTTATCGAAG AGCTGCATAA AGCCGAGCTT
TACCATAAAG TGAGTCAGGC ATTTACGGTA TTCTTACCTG TTCGCTCCGT TGGCGTCATG
GGTGATGGCC GTAAATATGA TTGGGTGGTT TCACTGCGCG CGGTTGAAAC GATCGACTTC
ATGACGGCTC ATTGGGCGCA TCTGCCTTAT GACTTCCTGG GTCGCGTATC GAACCGGATC
ATTAATGAAA TTGATGGGAT CTCCCGTGTT GTTTACGATA TTTCAGGTAA GCCGCCTGCG
ACTATCGAAT GGGAATAA
|
|---|
| Protein sequence | MSNIHEHKIL ILDFGSQYTQ LIARRIREIG VYCELWAWDV SEAQIKGFAP NGIILAGGPE
SVTADESPRA PEYVFNAGVP VLGICYGMQT MSEQLGGKVI EGIGEGEFGY AQIEIQEPSE
LFKSIEDAIS ESGKPLLDVW MSHGDKVLDI PEGFVTVANT ETCPHAAMAN EDKKFYGVQF
HPEVTHTRQG KRMLEHFALD ICECEANWKP TSIIEDAVER LKKQIGDDEV ILGLSGGVDS
SVVAMLLHRA IGDKLTCVFV DNGLLRLNEA DQVMDMFGDH FGLNIVHVNA ENRFLDAMKG
EADPEAKRKI IGHVFVEIFD EESKKCKNAK WLAQGTIYPD VIESAGSATG KAHVIKSHHN
VGGLPDDMEL GLVEPLRELF KDEVRKIGLE LGLPYDMLYR HPFPGPGLGV RVLGEVKKEY
CDLLRLADAI FIEELHKAEL YHKVSQAFTV FLPVRSVGVM GDGRKYDWVV SLRAVETIDF
MTAHWAHLPY DFLGRVSNRI INEIDGISRV VYDISGKPPA TIEWE
|
|---|
| |