| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3121 |
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| Symbol | |
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| ID | 5611232 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3767283 |
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| End bp | 3767816 |
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| Gene Length | 534 bp |
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| Protein Length | 177 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640934059 |
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| Product | cytidine/deoxycytidylate deaminase family protein |
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| Protein accession | YP_001474853 |
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| Protein GI | 157376253 |
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| COG category | [F] Nucleotide transport and metabolism
[J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0590] Cytosine/adenosine deaminases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGACTCAAC TAGATAGAGA TATCCATTTT ATGGCACTCG CCATGCTGCA GGCTGCCGAA
GCCGAGGCGA GGGGGGAAGT ACCTGTGGGC GCCGTTCTGG TAAAGGACGA TAAGGTGGTC
GCGGTTGGCT CAAATGATTG CATTGGACAG CACGATCCCA GTGCGCATGC CGAGATGCAG
TGTTTGCGTG AGGCTGGCAG GCTTGTTGAG AATTACCGCC TGCTCGATAC GACCCTCTAT
GTGACGCTTG AGCCGTGCGC CATGTGCGCC GGAGCCATGG TGCATTCACG AGTCTCACGA
TTGGTTTTTG GTGCTAAAGA TGAGAAGACC GGGGCAGCAG GCTCCGTTGT CGATCTGGTC
AGGCACCCGA GATTTAACCA TCAGCTGGAG GTAAACAATG GTGTACTCGA GCAGGAATGT
AGTGAGCAGC TGAGTCAATT TTTCCGTCGG CGCCGCAAGG AGAAGAAAGA GCAGAAAAGG
GAGCTGAAGC GGTTAGAAGC ATTGAAAAAT GATAGCAATG ACCCGGCTAG CTAG
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| Protein sequence | MTQLDRDIHF MALAMLQAAE AEARGEVPVG AVLVKDDKVV AVGSNDCIGQ HDPSAHAEMQ
CLREAGRLVE NYRLLDTTLY VTLEPCAMCA GAMVHSRVSR LVFGAKDEKT GAAGSVVDLV
RHPRFNHQLE VNNGVLEQEC SEQLSQFFRR RRKEKKEQKR ELKRLEALKN DSNDPAS
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