| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3120 |
|---|
| Symbol | |
|---|
| ID | 5611231 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 3765424 |
|---|
| End bp | 3766866 |
|---|
| Gene Length | 1443 bp |
|---|
| Protein Length | 480 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640934058 |
|---|
| Product | putative transglycosylase |
|---|
| Protein accession | YP_001474852 |
|---|
| Protein GI | 157376252 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4623] Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAC TTTTGTTTGT CTTGCTCACT ATAACCTTGC TGGCGTCTTG CCAGAAGGTA
AGTGTGGAAC AAACAAAGGT GATACCCGAA CCAATAAAGA AAACCACACT TAATGTTGGA
ACCCTCTATG GTGCACAAAT ATTTGTGACT ACAGGGCAAG GTGAGGCCGG ATTCGATTTT
GAGATGGCGA GTCGATTTGC TGAATATCTT AAATTAGAAC TTAAGATGAA ACCTTACTCC
AATATCAGCG AGCTTTATCA AGCGCTCGAG AGTGGTGAAG TCGATCTGCT TGCAGCAGGA
CTTGCCGATA CCCCGACTCG ACGGGAGAAA TTCCGCTTAG GCCCACCTCT GTATCGGGTT
AATCAGGTCT TGGTCTATAA GCAAGGAACC CCGATACCTA AAGATGTTTC GACGCTGGAA
GATAACATTA CCGTTATCAC CGACTCCTCT TTTGTTGAAA CTCTATCTCA ACTGCAAAAA
CTCTATCCTG AACTGGTGTG GGAGCAGGAG AAAGAGAAAG ACAGCGAAGA GCTAATGGCC
ATGATTGCCA GAGGCGAAAT CACCTATACC ATCGCCGACT CGAGCACCTT TGAGATCAAC
AGGCGCTACC TGCCAGAGTT AAGGGCCGGC CCCATTCTTA AAGAGAAACA GGCGATAGTC
TGGCTATTGC CACCGAAAAA CAGCGATCAA CTCATGAGTG ATCTGCTCAC ATTCTGGCAC
TATGAGAAAC GCTCGGGCAC CCTTGCACAC CTCAATGAAA AGTATTTCGC CCATGTCAAA
CGCTTCGATT ATGTCGATAC CCGTGCATTT CTCAGGGCTA TCGATAACAA GCTACCGAAA
TATAAGGAAA GTTTTCAACA TTATGCCAAT GGTATCGACT GGCGAAAGCT TGCCGCCACC
GCTTATCAGG AATCTCACTG GAATCCGAAT GCCCGCTCGC CAACCGGGGT GAGAGGCTTG
ATGATGCTGA CACTTCCGAC GGCAAAACAG GTTGGTATAA AAAATCGACT CGACCCGATA
CAGAGTATCA AGGGAGGAGC GAAGTACCTC AATGATATTC TTAACCGGTT ACCCGACTCT
ATCCCTGAAA ATCAGCGAAT GTGGTTTGCC TTAGCCTCCT ACAATATCGG CTATGGACAT
GTCGAAGACG CGCGTAAACT GGCACAATCG ATGGGACTGA ATCCCAGCGC TTGGCGGGAT
CTGAAAGAGG TCCTCCCCCT GCTTCACAAA CGTAAATACT ATCAACGCAC CCGATACGGC
TATGCCCGTG GTAATGAGGC CGTTCACTAT GTCGATAGTA TCAGGCGCTA TTATGATACG
TTAGTCTGGG TAGATAACCA GAACCAACTC TTGATAGATG AAAAAGCATC GGCCGAAGAG
TCTCAGCTCG CTGAGAAAAT CGGAGGCAAG CAAGAGAACC TATCGGGTGC CCAGCCCCAA
TAA
|
|---|
| Protein sequence | MKKLLFVLLT ITLLASCQKV SVEQTKVIPE PIKKTTLNVG TLYGAQIFVT TGQGEAGFDF
EMASRFAEYL KLELKMKPYS NISELYQALE SGEVDLLAAG LADTPTRREK FRLGPPLYRV
NQVLVYKQGT PIPKDVSTLE DNITVITDSS FVETLSQLQK LYPELVWEQE KEKDSEELMA
MIARGEITYT IADSSTFEIN RRYLPELRAG PILKEKQAIV WLLPPKNSDQ LMSDLLTFWH
YEKRSGTLAH LNEKYFAHVK RFDYVDTRAF LRAIDNKLPK YKESFQHYAN GIDWRKLAAT
AYQESHWNPN ARSPTGVRGL MMLTLPTAKQ VGIKNRLDPI QSIKGGAKYL NDILNRLPDS
IPENQRMWFA LASYNIGYGH VEDARKLAQS MGLNPSAWRD LKEVLPLLHK RKYYQRTRYG
YARGNEAVHY VDSIRRYYDT LVWVDNQNQL LIDEKASAEE SQLAEKIGGK QENLSGAQPQ
|
|---|
| |